PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16501-16550 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.8215 | 82.4299 | 96.2877 | 75.1298 | 441 | 94 | 415 | 16 | 14 | 87.5000 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | het | 93.2290 | 92.6592 | 93.8060 | 83.9790 | 1237 | 98 | 1257 | 83 | 14 | 16.8675 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | het | 93.4243 | 92.8109 | 94.0459 | 85.2736 | 1291 | 100 | 1311 | 83 | 14 | 16.8675 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | het | 93.4708 | 92.8977 | 94.0510 | 85.3951 | 1308 | 100 | 1328 | 84 | 14 | 16.6667 | |
| gduggal-snapfb | INDEL | * | map_siren | hetalt | 66.5492 | 57.0850 | 79.7753 | 93.0196 | 141 | 106 | 71 | 18 | 14 | 77.7778 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | homalt | 87.5090 | 81.5534 | 94.4030 | 66.1616 | 252 | 57 | 253 | 15 | 14 | 93.3333 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.0169 | 58.7500 | 93.0233 | 81.0095 | 282 | 198 | 280 | 21 | 14 | 66.6667 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0429 | 88.9798 | 97.4948 | 82.9386 | 4239 | 525 | 4242 | 109 | 14 | 12.8440 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.0576 | 82.2478 | 99.5062 | 84.1820 | 3220 | 695 | 3224 | 16 | 14 | 87.5000 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | het | 60.8863 | 43.9547 | 99.0352 | 95.3638 | 3490 | 4450 | 3490 | 34 | 14 | 41.1765 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | het | 68.0749 | 51.8819 | 98.9622 | 92.4159 | 4287 | 3976 | 4291 | 45 | 14 | 31.1111 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 69.0120 | 55.2569 | 91.8848 | 94.6637 | 699 | 566 | 702 | 62 | 14 | 22.5806 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.8275 | 71.3902 | 98.6286 | 59.1429 | 5320 | 2132 | 5322 | 74 | 14 | 18.9189 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | * | 91.5776 | 96.7866 | 86.9006 | 90.8380 | 753 | 25 | 743 | 112 | 14 | 12.5000 | |
| gduggal-bwavard | INDEL | D6_15 | * | homalt | 78.7719 | 65.1755 | 99.5366 | 41.1089 | 4123 | 2203 | 4081 | 19 | 14 | 73.6842 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | homalt | 86.1695 | 76.9889 | 97.8360 | 44.7799 | 900 | 269 | 859 | 19 | 14 | 73.6842 | |
| gduggal-bwavard | INDEL | I16_PLUS | * | homalt | 81.4493 | 70.7880 | 95.8916 | 51.4843 | 1105 | 456 | 1097 | 47 | 14 | 29.7872 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | het | 98.5293 | 97.6179 | 99.4579 | 45.4535 | 9794 | 239 | 9540 | 52 | 14 | 26.9231 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.0239 | 89.8477 | 98.6072 | 53.8165 | 1062 | 120 | 1062 | 15 | 14 | 93.3333 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | het | 97.4370 | 95.9481 | 98.9728 | 64.1950 | 3031 | 128 | 2987 | 31 | 14 | 45.1613 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002complexvar | hetalt | 90.0802 | 86.6397 | 93.8053 | 58.5321 | 214 | 33 | 212 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.5391 | 79.3197 | 97.6589 | 50.7414 | 583 | 152 | 584 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6222 | 99.3336 | 99.9125 | 51.6616 | 25190 | 169 | 25113 | 22 | 14 | 63.6364 | |
| jli-custom | SNP | ti | HG002compoundhet | het | 99.6793 | 99.7265 | 99.6321 | 39.4553 | 9479 | 26 | 9479 | 35 | 14 | 40.0000 | |
| jli-custom | SNP | tv | HG002compoundhet | * | 99.6414 | 99.6526 | 99.6301 | 48.9851 | 8892 | 31 | 8889 | 33 | 14 | 42.4242 | |
| jli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2041 | 99.7097 | 98.7036 | 65.3598 | 17517 | 51 | 17512 | 230 | 14 | 6.0870 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | het | 98.4127 | 97.9096 | 98.9210 | 71.8623 | 4309 | 92 | 4309 | 47 | 14 | 29.7872 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | het | 96.0483 | 98.2103 | 93.9795 | 90.0412 | 2195 | 40 | 2201 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1235 | 98.1795 | 94.1518 | 90.6489 | 2265 | 42 | 2270 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | het | 96.1817 | 98.2074 | 94.2378 | 90.6863 | 2301 | 42 | 2306 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | hetalt | 96.0050 | 92.9126 | 99.3103 | 38.0720 | 1796 | 137 | 2016 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.1538 | 87.8543 | 96.8958 | 47.4971 | 217 | 30 | 437 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.0284 | 92.9570 | 99.3097 | 38.0196 | 1795 | 136 | 2014 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0284 | 92.9570 | 99.3097 | 38.0196 | 1795 | 136 | 2014 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1285 | 98.7253 | 99.5351 | 51.6909 | 3640 | 47 | 3640 | 17 | 14 | 82.3529 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | het | 99.6695 | 99.5052 | 99.8344 | 58.2792 | 18099 | 90 | 18081 | 30 | 14 | 46.6667 | |
| jmaeng-gatk | SNP | * | segdup | * | 98.5236 | 99.2803 | 97.7783 | 93.6584 | 27865 | 202 | 27859 | 633 | 14 | 2.2117 | |
| jmaeng-gatk | SNP | ti | map_siren | homalt | 91.9235 | 85.0855 | 99.9566 | 52.7056 | 32261 | 5655 | 32255 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | het | 91.2990 | 86.7484 | 96.3534 | 83.6231 | 13374 | 2043 | 13370 | 506 | 14 | 2.7668 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | het | 91.4492 | 87.0444 | 96.3236 | 84.5266 | 13733 | 2044 | 13729 | 524 | 14 | 2.6718 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | het | 91.5298 | 87.1628 | 96.3575 | 84.5264 | 13892 | 2046 | 13888 | 525 | 14 | 2.6667 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5849 | 13.9276 | 76.9231 | 73.7903 | 50 | 309 | 50 | 15 | 14 | 93.3333 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 68.0618 | 59.5506 | 79.4118 | 68.0751 | 53 | 36 | 54 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 58.2524 | 50.8475 | 68.1818 | 80.3571 | 30 | 29 | 30 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 71.9298 | 69.4915 | 74.5455 | 87.0892 | 41 | 18 | 41 | 14 | 14 | 100.0000 | |