PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16351-16400 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3458 | 99.4510 | 99.2408 | 86.4188 | 2355 | 13 | 2353 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.8628 | 99.8712 | 99.8543 | 55.6453 | 17828 | 23 | 17825 | 26 | 14 | 53.8462 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | homalt | 99.2059 | 98.7531 | 99.6629 | 68.6730 | 4435 | 56 | 4435 | 15 | 14 | 93.3333 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | * | 96.8421 | 96.2092 | 97.4834 | 91.8033 | 736 | 29 | 736 | 19 | 14 | 73.6842 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4910 | 99.5737 | 99.4084 | 59.3516 | 27560 | 118 | 27559 | 164 | 14 | 8.5366 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0937 | 98.6068 | 97.5858 | 73.2956 | 14368 | 203 | 14552 | 360 | 14 | 3.8889 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0937 | 98.6068 | 97.5858 | 73.2956 | 14368 | 203 | 14552 | 360 | 14 | 3.8889 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | het | 63.6557 | 48.8737 | 91.2568 | 79.7342 | 499 | 522 | 501 | 48 | 14 | 29.1667 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | het | 71.4286 | 76.9231 | 66.6667 | 92.1980 | 60 | 18 | 62 | 31 | 14 | 45.1613 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5368 | 96.9631 | 98.1174 | 69.9601 | 894 | 28 | 886 | 17 | 14 | 82.3529 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2160 | 81.7010 | 93.5294 | 74.9816 | 317 | 71 | 318 | 22 | 14 | 63.6364 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9735 | 92.2961 | 93.6609 | 72.5054 | 611 | 51 | 591 | 40 | 14 | 35.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9816 | 80.4878 | 81.4815 | 72.4490 | 66 | 16 | 66 | 15 | 14 | 93.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3687 | 96.7718 | 97.9730 | 70.6802 | 1319 | 44 | 1305 | 27 | 14 | 51.8519 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5480 | 98.7793 | 98.3178 | 63.7657 | 1052 | 13 | 1052 | 18 | 14 | 77.7778 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | het | 97.4601 | 95.6257 | 99.3663 | 87.5048 | 4547 | 208 | 4547 | 29 | 14 | 48.2759 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | het | 97.5992 | 95.8799 | 99.3814 | 87.8462 | 4980 | 214 | 4980 | 31 | 14 | 45.1613 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | het | 97.6025 | 95.8967 | 99.3701 | 87.9415 | 5048 | 216 | 5048 | 32 | 14 | 43.7500 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.2021 | 88.9542 | 95.6962 | 86.1888 | 757 | 94 | 756 | 34 | 14 | 41.1765 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | homalt | 85.5333 | 78.7470 | 93.5994 | 81.7141 | 993 | 268 | 1360 | 93 | 14 | 15.0538 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | hetalt | 90.0287 | 86.6397 | 93.6937 | 56.8932 | 214 | 33 | 208 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6386 | 95.9000 | 99.4413 | 58.6605 | 3415 | 146 | 3382 | 19 | 14 | 73.6842 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.8711 | 79.8639 | 97.6628 | 43.9139 | 587 | 148 | 585 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0883 | 96.9293 | 99.2754 | 77.2008 | 1673 | 53 | 1918 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | het | 95.9122 | 96.4706 | 95.3602 | 73.5551 | 820 | 30 | 781 | 38 | 14 | 36.8421 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8496 | 98.7433 | 98.9562 | 63.8705 | 3850 | 49 | 3887 | 41 | 14 | 34.1463 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.1878 | 96.9931 | 99.4123 | 51.7989 | 3387 | 105 | 3383 | 20 | 14 | 70.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | homalt | 99.8127 | 99.6852 | 99.9406 | 57.7080 | 26918 | 85 | 26916 | 16 | 14 | 87.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.3362 | 74.6667 | 78.0822 | 54.3750 | 56 | 19 | 57 | 16 | 14 | 87.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.6183 | 92.3077 | 55.8824 | 66.9903 | 12 | 1 | 19 | 15 | 14 | 93.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 66.9692 | 50.8453 | 98.0681 | 41.1478 | 1203 | 1163 | 1066 | 21 | 14 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.1751 | 86.5854 | 87.7729 | 84.1083 | 213 | 33 | 201 | 28 | 14 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.2038 | 90.1961 | 84.4037 | 69.2958 | 92 | 10 | 92 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 85.1291 | 77.3913 | 94.5860 | 94.9534 | 267 | 78 | 297 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.7455 | 87.5000 | 78.4810 | 39.4636 | 21 | 3 | 124 | 34 | 14 | 41.1765 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 81.2263 | 68.6424 | 99.4598 | 26.8379 | 5860 | 2677 | 3682 | 20 | 14 | 70.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1120 | 87.5000 | 67.3469 | 73.6559 | 21 | 3 | 33 | 16 | 14 | 87.5000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.4218 | 99.0610 | 97.7907 | 85.5292 | 844 | 8 | 841 | 19 | 14 | 73.6842 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3772 | 99.5369 | 99.2181 | 66.4594 | 3439 | 16 | 3426 | 27 | 14 | 51.8519 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.8561 | 97.7330 | 92.1437 | 91.1616 | 776 | 18 | 821 | 70 | 14 | 20.0000 | |
| qzeng-custom | SNP | tv | map_l150_m0_e0 | homalt | 77.7789 | 64.3072 | 98.3908 | 80.7905 | 854 | 474 | 856 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | * | 54.4256 | 40.9357 | 81.1765 | 90.6181 | 70 | 101 | 69 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | homalt | 64.7619 | 59.6491 | 70.8333 | 88.7324 | 34 | 23 | 34 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | * | 56.5892 | 42.9348 | 82.9787 | 91.5996 | 79 | 105 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.0391 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | * | 56.3873 | 42.7027 | 82.9787 | 91.9105 | 79 | 106 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.4315 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1683 | 97.6744 | 72.4138 | 74.4493 | 42 | 1 | 42 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.8272 | 96.9199 | 96.7347 | 59.5376 | 472 | 15 | 474 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | * | 67.1440 | 61.1650 | 74.4186 | 83.6190 | 63 | 40 | 64 | 22 | 14 | 63.6364 | |