PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16101-16150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1049 | 99.5122 | 91.0714 | 91.1567 | 204 | 1 | 204 | 20 | 15 | 75.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1049 | 99.5122 | 91.0714 | 91.1567 | 204 | 1 | 204 | 20 | 15 | 75.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5281 | 99.6497 | 97.4315 | 67.4470 | 569 | 2 | 569 | 15 | 15 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6097 | 95.8719 | 99.4116 | 60.6552 | 3414 | 147 | 3379 | 20 | 15 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002compoundhet | het | 96.8725 | 96.2617 | 97.4910 | 56.0860 | 824 | 32 | 816 | 21 | 15 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0444 | 86.0070 | 98.9933 | 33.2437 | 1469 | 239 | 1475 | 15 | 15 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2308 | 97.0167 | 99.4755 | 56.4489 | 5561 | 171 | 5690 | 30 | 15 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | homalt | 96.6009 | 94.9670 | 98.2921 | 70.2641 | 1151 | 61 | 1151 | 20 | 15 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 67.0051 | 56.8966 | 81.4815 | 86.4775 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2166 | 98.6148 | 99.8259 | 68.6168 | 10892 | 153 | 10892 | 19 | 15 | 78.9474 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2383 | 98.6529 | 99.8307 | 70.9546 | 11205 | 153 | 11205 | 19 | 15 | 78.9474 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | homalt | 99.2450 | 98.6647 | 99.8322 | 70.9730 | 11305 | 153 | 11305 | 19 | 15 | 78.9474 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8315 | 98.4480 | 99.2179 | 58.3587 | 1903 | 30 | 1903 | 15 | 15 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8263 | 99.7319 | 99.9210 | 54.5963 | 25291 | 68 | 25293 | 20 | 15 | 75.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8948 | 95.1662 | 96.6346 | 75.0898 | 630 | 32 | 603 | 21 | 15 | 71.4286 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3984 | 98.2332 | 94.6309 | 68.0258 | 278 | 5 | 282 | 16 | 15 | 93.7500 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.6852 | 99.1559 | 98.2189 | 80.5400 | 14448 | 123 | 14448 | 262 | 15 | 5.7252 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.6852 | 99.1559 | 98.2189 | 80.5400 | 14448 | 123 | 14448 | 262 | 15 | 5.7252 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.8225 | 67.8161 | 71.9512 | 99.9249 | 59 | 28 | 59 | 23 | 15 | 65.2174 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | * | 74.4828 | 71.0526 | 78.2609 | 53.6913 | 54 | 22 | 54 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | het | 74.4186 | 82.0513 | 68.0851 | 50.5263 | 32 | 7 | 32 | 15 | 15 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | homalt | 99.7372 | 99.6299 | 99.8447 | 62.2918 | 11577 | 43 | 11575 | 18 | 15 | 83.3333 | |
| ltrigg-rtg1 | SNP | * | map_l150_m0_e0 | * | 98.1003 | 96.5675 | 99.6825 | 69.8517 | 11619 | 413 | 11615 | 37 | 15 | 40.5405 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5066 | 94.4770 | 98.6254 | 46.6789 | 1129 | 66 | 1148 | 16 | 15 | 93.7500 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3235 | 86.4435 | 99.0619 | 31.9285 | 1575 | 247 | 1584 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | * | 99.0944 | 99.1782 | 99.0107 | 80.6593 | 3500 | 29 | 3503 | 35 | 15 | 42.8571 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9624 | 98.4167 | 99.5141 | 71.6519 | 3481 | 56 | 3482 | 17 | 15 | 88.2353 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8100 | 92.2531 | 99.6523 | 26.1175 | 4287 | 360 | 4299 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7653 | 92.1626 | 99.6610 | 30.6426 | 4398 | 374 | 4410 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | het | 98.4530 | 98.2748 | 98.6318 | 80.8695 | 1652 | 29 | 1658 | 23 | 15 | 65.2174 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0809 | 95.6851 | 98.5179 | 60.2481 | 1264 | 57 | 1263 | 19 | 15 | 78.9474 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1713 | 99.1535 | 99.1891 | 87.0415 | 2694 | 23 | 2691 | 22 | 15 | 68.1818 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | homalt | 99.8258 | 99.7223 | 99.9295 | 56.9722 | 26928 | 75 | 26928 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | homalt | 99.8291 | 99.7275 | 99.9308 | 59.5568 | 27448 | 75 | 27448 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | homalt | 99.8307 | 99.7302 | 99.9315 | 59.5367 | 27721 | 75 | 27721 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | * | 99.1433 | 99.2014 | 99.0854 | 69.5094 | 44965 | 362 | 44959 | 415 | 15 | 3.6145 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | * | 99.1550 | 99.2145 | 99.0956 | 71.3320 | 46356 | 367 | 46350 | 423 | 15 | 3.5461 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | * | 99.1573 | 99.2225 | 99.0922 | 71.3931 | 46835 | 367 | 46829 | 429 | 15 | 3.4965 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8505 | 98.2637 | 99.4444 | 73.4266 | 14318 | 253 | 14318 | 80 | 15 | 18.7500 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.8505 | 98.2637 | 99.4444 | 73.4266 | 14318 | 253 | 14318 | 80 | 15 | 18.7500 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.6418 | 89.6396 | 91.6667 | 81.6483 | 199 | 23 | 198 | 18 | 15 | 83.3333 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2878 | 94.3032 | 98.3577 | 77.3927 | 1076 | 65 | 1078 | 18 | 15 | 83.3333 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | * | 97.7792 | 95.7401 | 99.9071 | 39.6169 | 24722 | 1100 | 24722 | 23 | 15 | 65.2174 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9781 | 96.7532 | 97.2039 | 68.0840 | 596 | 20 | 591 | 17 | 15 | 88.2353 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.1429 | 95.1220 | 83.8710 | 75.9067 | 78 | 4 | 78 | 15 | 15 | 100.0000 | |