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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
1551-1600 / 86044 show all
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.9291
98.9219
93.1120
72.4097
167921831680312431086
87.3693
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
72.3083
81.8625
64.7512
68.9679
2013446201710981086
98.9071
gduggal-snapplatSNP*map_l100_m2_e0*
95.4808
94.0120
96.9962
77.3300
6953544296955521541085
50.3714
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
35.8287
33.0357
39.1376
73.2950
703142570811011085
98.5468
gduggal-bwavardINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
42.2458
32.6120
59.9579
69.4254
17333581171011421085
95.0088
gduggal-snapvardSNPtvHG002compoundhet*
76.6128
76.8912
76.3364
58.1709
68612062712622091084
49.0720
gduggal-bwavardINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
68.8039
91.6288
55.0827
70.2532
1412129139811401083
95.0000
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
29.4305
22.6149
42.1263
81.2487
22787795273437561082
28.8072
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
91.2907
89.1727
93.5118
37.7146
1836622301906813231081
81.7082
gduggal-snapplatSNP*map_l100_m1_e0*
95.4122
93.9174
96.9553
75.8528
6799944046801921361080
50.5618
anovak-vgINDEL*map_sirenhomalt
77.1234
89.6798
67.6512
75.5300
2381274240511501080
93.9130
anovak-vgSNPtvmap_l125_m2_e1*
80.9704
87.5908
75.2805
76.3445
1459020671456047811080
22.5894
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4383
96.3424
96.5343
67.6863
4175015854440015941079
67.6913
ciseli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
43.0574
79.0698
29.5836
47.9961
47612647611331076
94.9691
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.1638
96.5250
97.8111
70.9066
6219222396340814191076
75.8280
anovak-vgSNPtvmap_l125_m2_e0*
80.8739
87.5311
75.1578
76.3071
1443320561441047631075
22.5698
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.4346
30.2162
37.4205
71.0821
643148564710821074
99.2606
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.2548
97.7351
94.8187
76.1564
214034962139311691072
91.7023
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.8948
28.9913
40.7948
49.7853
799195781111771070
90.9091
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8701
97.6006
98.1411
68.2416
6378315686351312031069
88.8612
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8701
97.6006
98.1411
68.2416
6378315686351312031069
88.8612
anovak-vgINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
68.7372
91.6432
54.9921
52.9543
97689138811361069
94.1021
gduggal-snapplatSNP*map_l100_m2_e1het
95.2787
95.1235
95.4344
81.1824
4461122874464921361068
50.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
78.0369
75.9494
80.2425
77.9111
46201463469911571067
92.2213
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
50.2132
87.3684
35.2307
72.3584
5818458810811065
98.5199
ciseli-customINDELD16_PLUSHG002compoundhethomalt
1.0601
75.0000
0.5338
31.6717
62611181065
95.2594
gduggal-snapplatSNP*map_l100_m2_e0het
95.2448
95.0839
95.4062
81.1675
4411822814415421261062
49.9530
ciseli-customINDELD6_15HG002complexvarhomalt
60.1083
92.0445
44.6250
54.8278
107693107113291061
79.8345
gduggal-bwaplatSNP*HG002complexvar*
97.7797
96.6309
98.9561
21.4247
7289652541672951676961060
13.7734
ghariani-varprowlINDELI16_PLUSHG002compoundhet*
1.7907
1.3532
2.6460
56.7653
2921142910671059
99.2502
gduggal-snapplatSNP*map_l100_m1_e0het
95.1709
95.0043
95.3380
79.9679
4309322664312921091058
50.1660
jlack-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3660
98.2626
98.4696
72.6251
9280816419271714411058
73.4212
qzeng-customINDELI6_15**
88.1501
86.9073
89.4289
48.1019
2157332502164025581057
41.3213
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
57.1106
50.0879
66.4235
43.0727
25632554273213811057
76.5387
ciseli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
46.1795
45.3564
47.0329
65.4087
18072177181520441056
51.6634
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
78.4414
76.5741
80.4020
77.5023
46581425480011701056
90.2564
anovak-vgINDELI16_PLUS*homalt
55.6761
71.2364
45.6948
36.9604
1112449114113561055
77.8024
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.1553
96.5499
82.8127
57.5437
5485196548811391055
92.6251
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
71.6762
82.1328
63.5814
72.1033
1756382273415661053
67.2414
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
80.7791
74.7144
87.9154
43.6787
1092136962195630181053
34.8907
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.6236
78.3459
33.1864
69.7120
52114452710611053
99.2460
anovak-vgSNPtvmap_l125_m1_e0*
80.6396
87.4563
74.8088
74.7170
1400720091398447091051
22.3190
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2302
96.1664
96.2940
60.8295
3644914533910515051051
69.8339
qzeng-customINDELD1_5*het
98.6409
98.8844
98.3986
58.7330
865979779610315641050
67.1355
jpowers-varprowlINDELI16_PLUSHG002compoundhet*
1.3665
1.0266
2.0427
54.2286
2221212210551050
99.5261
anovak-vgSNPtvmap_l125_m2_e1het
77.4408
91.5759
67.0858
78.0971
9664889965747381048
22.1190
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.6118
96.7950
81.7043
50.5663
4953164495711101047
94.3243
ciseli-customSNP*map_l150_m2_e1homalt
86.5594
84.7045
88.4973
73.1841
100181809999412991047
80.6005
gduggal-snapvardSNPtvHG002compoundhethet
75.6689
85.2771
68.0065
62.2530
3985688458521571046
48.4933
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.0468
96.6402
77.5463
56.5992
3164110372310781046
97.0315