PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15801-15850 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | map_siren | homalt | 60.7595 | 70.5882 | 53.3333 | 89.9103 | 24 | 10 | 24 | 21 | 16 | 76.1905 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 54.0881 | 52.4390 | 55.8442 | 94.0769 | 43 | 39 | 43 | 34 | 16 | 47.0588 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 26.0012 | 16.8539 | 56.8627 | 86.1789 | 30 | 148 | 29 | 22 | 16 | 72.7273 | |
| ciseli-custom | INDEL | I6_15 | segdup | homalt | 42.7935 | 38.2979 | 48.4848 | 89.2157 | 18 | 29 | 16 | 17 | 16 | 94.1176 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6637 | 96.7532 | 98.5915 | 61.0394 | 1192 | 40 | 1190 | 17 | 16 | 94.1176 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1772 | 98.9228 | 99.4328 | 67.8997 | 3857 | 42 | 3857 | 22 | 16 | 72.7273 | |
| ckim-dragen | SNP | * | map_l150_m0_e0 | homalt | 99.3015 | 99.0707 | 99.5334 | 70.2317 | 4051 | 38 | 4053 | 19 | 16 | 84.2105 | |
| ckim-dragen | SNP | * | map_l250_m2_e0 | homalt | 99.1424 | 98.9948 | 99.2905 | 83.9458 | 2659 | 27 | 2659 | 19 | 16 | 84.2105 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | het | 96.3314 | 96.9985 | 95.6733 | 91.4307 | 5106 | 158 | 5108 | 231 | 16 | 6.9264 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | homalt | 99.1340 | 98.9698 | 99.2986 | 84.0205 | 2690 | 28 | 2690 | 19 | 16 | 84.2105 | |
| ckim-dragen | SNP | ti | map_l125_m1_e0 | homalt | 99.5597 | 99.2757 | 99.8453 | 60.3228 | 10965 | 80 | 10970 | 17 | 16 | 94.1176 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | homalt | 99.5541 | 99.2604 | 99.8495 | 63.2256 | 11274 | 84 | 11279 | 17 | 16 | 94.1176 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | homalt | 99.5580 | 99.2669 | 99.8508 | 63.2612 | 11374 | 84 | 11379 | 17 | 16 | 94.1176 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.9226 | 99.8834 | 90.4311 | 55.1415 | 857 | 1 | 860 | 91 | 16 | 17.5824 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4043 | 74.2857 | 35.8974 | 92.5643 | 26 | 9 | 28 | 50 | 16 | 32.0000 | |
| ciseli-custom | SNP | tv | segdup | het | 93.4710 | 97.3331 | 89.9038 | 92.8401 | 5146 | 141 | 5138 | 577 | 16 | 2.7730 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8661 | 87.0293 | 99.5422 | 40.0515 | 3328 | 496 | 3479 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5579 | 99.4508 | 99.6651 | 63.3945 | 11047 | 61 | 11012 | 37 | 16 | 43.2432 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2860 | 97.0041 | 97.5694 | 83.2558 | 939 | 29 | 843 | 21 | 16 | 76.1905 | |
| ckim-dragen | INDEL | D16_PLUS | * | hetalt | 96.2097 | 93.3782 | 99.2184 | 39.1860 | 1805 | 128 | 2031 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.7763 | 98.9668 | 96.6142 | 83.7783 | 1341 | 14 | 1227 | 43 | 16 | 37.2093 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2055 | 93.3713 | 99.2172 | 39.1486 | 1803 | 128 | 2028 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2055 | 93.3713 | 99.2172 | 39.1486 | 1803 | 128 | 2028 | 16 | 16 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8358 | 99.8591 | 99.8124 | 64.8592 | 27639 | 39 | 27673 | 52 | 16 | 30.7692 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5405 | 99.5949 | 99.4862 | 63.6798 | 11063 | 45 | 11037 | 57 | 16 | 28.0702 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8986 | 96.7532 | 97.0443 | 67.8288 | 596 | 20 | 591 | 18 | 16 | 88.8889 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | * | 95.3298 | 96.2358 | 94.4406 | 89.8140 | 1355 | 53 | 1376 | 81 | 16 | 19.7531 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6497 | 97.9456 | 99.3640 | 46.2896 | 1621 | 34 | 2812 | 18 | 16 | 88.8889 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 34.8632 | 22.3938 | 78.6667 | 77.6119 | 58 | 201 | 59 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 64.3676 | 52.1127 | 84.1584 | 21.7054 | 74 | 68 | 85 | 16 | 16 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.0802 | 45.2489 | 35.9712 | 97.0872 | 100 | 121 | 100 | 178 | 16 | 8.9888 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.4017 | 83.5211 | 0 | 0 | 22 | 212 | 16 | 7.5472 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 9.2511 | 83.1727 | 0 | 0 | 21 | 206 | 16 | 7.7670 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 49.7817 | 100.0000 | 33.1395 | 82.4847 | 1 | 0 | 57 | 115 | 16 | 13.9130 | |
| gduggal-snapvard | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 45.1852 | 95.1587 | 0 | 0 | 122 | 148 | 16 | 10.8108 | |
| gduggal-snapvard | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 37.0690 | 95.2998 | 0 | 0 | 86 | 146 | 16 | 10.9589 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 47.6817 | 34.6405 | 76.4706 | 72.3577 | 53 | 100 | 52 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | homalt | 96.2940 | 93.4893 | 99.2723 | 82.1168 | 6275 | 437 | 6275 | 46 | 16 | 34.7826 | |
| gduggal-snapfb | SNP | * | segdup | het | 98.5769 | 99.3590 | 97.8069 | 92.1233 | 17206 | 111 | 17215 | 386 | 16 | 4.1451 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5028 | 99.3917 | 79.7641 | 72.5419 | 2941 | 18 | 2976 | 755 | 16 | 2.1192 | |
| gduggal-snapplat | INDEL | * | map_siren | homalt | 83.6919 | 74.7269 | 95.1011 | 85.8909 | 1984 | 671 | 2116 | 109 | 16 | 14.6789 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | het | 73.8070 | 99.0991 | 58.8000 | 95.2866 | 110 | 1 | 147 | 103 | 16 | 15.5340 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 29.7335 | 17.6883 | 93.2000 | 52.5617 | 101 | 470 | 233 | 17 | 16 | 94.1176 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | * | 62.0192 | 60.0000 | 64.1791 | 85.8351 | 9 | 6 | 43 | 24 | 16 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | het | 72.5537 | 88.8889 | 61.2903 | 85.7798 | 8 | 1 | 38 | 24 | 16 | 66.6667 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | homalt | 96.6127 | 93.9349 | 99.4477 | 77.1281 | 3841 | 248 | 3781 | 21 | 16 | 76.1905 | |
| gduggal-snapvard | SNP | ti | map_l250_m0_e0 | het | 74.2218 | 92.7195 | 61.8773 | 94.8028 | 866 | 68 | 857 | 528 | 16 | 3.0303 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 56.7901 | 56.0976 | 57.5000 | 80.9524 | 23 | 18 | 23 | 17 | 16 | 94.1176 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 72.3810 | 66.6667 | 79.1667 | 87.9093 | 76 | 38 | 76 | 20 | 16 | 80.0000 | |