PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15451-15500 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4613 | 99.2277 | 99.6960 | 43.2493 | 6681 | 52 | 7543 | 23 | 17 | 73.9130 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | het | 94.3799 | 96.1802 | 92.6457 | 86.7828 | 982 | 39 | 1033 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | * | 95.3280 | 96.1779 | 94.4929 | 89.8327 | 1384 | 55 | 1407 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0943 | 97.2973 | 92.9889 | 49.2509 | 252 | 7 | 252 | 19 | 17 | 89.4737 | |
| ciseli-custom | SNP | ti | * | hetalt | 87.1087 | 81.2715 | 93.8492 | 39.4958 | 473 | 109 | 473 | 31 | 17 | 54.8387 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.5329 | 95.0920 | 98.0180 | 79.6517 | 1085 | 56 | 1088 | 22 | 17 | 77.2727 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5044 | 99.4538 | 99.5551 | 80.0137 | 10742 | 59 | 10742 | 48 | 17 | 35.4167 | |
| ckim-gatk | SNP | tv | HG002compoundhet | * | 99.2966 | 98.8905 | 99.7061 | 49.4688 | 8824 | 99 | 8821 | 26 | 17 | 65.3846 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | * | 88.1419 | 80.3355 | 97.6286 | 80.4620 | 19683 | 4818 | 19679 | 478 | 17 | 3.5565 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3659 | 80.7254 | 97.6039 | 81.5961 | 20208 | 4825 | 20204 | 496 | 17 | 3.4274 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4609 | 80.8686 | 97.6264 | 81.5863 | 20446 | 4837 | 20442 | 497 | 17 | 3.4205 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.5030 | 90.1484 | 97.1168 | 71.5703 | 668 | 73 | 640 | 19 | 17 | 89.4737 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3872 | 99.0063 | 99.7710 | 48.5556 | 11757 | 118 | 11762 | 27 | 17 | 62.9630 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4263 | 99.4533 | 99.3994 | 51.5732 | 3638 | 20 | 3641 | 22 | 17 | 77.2727 | |
| rpoplin-dv42 | INDEL | * | segdup | het | 98.8084 | 98.8404 | 98.7763 | 94.3566 | 1449 | 17 | 1453 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0051 | 98.4010 | 99.6166 | 36.8952 | 4677 | 76 | 4677 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7968 | 99.7563 | 99.8374 | 54.8306 | 14734 | 36 | 14736 | 24 | 17 | 70.8333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.4388 | 78.8732 | 95.6098 | 71.0452 | 392 | 105 | 392 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 89.0110 | 82.5328 | 96.5928 | 74.6983 | 567 | 120 | 567 | 20 | 17 | 85.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | homalt | 98.7551 | 97.9702 | 99.5527 | 75.0450 | 4006 | 83 | 4006 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | homalt | 99.4451 | 99.1253 | 99.7670 | 62.0330 | 7706 | 68 | 7706 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.8491 | 99.8406 | 99.8576 | 65.2848 | 17540 | 28 | 17527 | 25 | 17 | 68.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.5504 | 99.5402 | 99.5606 | 75.8969 | 14504 | 67 | 14502 | 64 | 17 | 26.5625 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.5504 | 99.5402 | 99.5606 | 75.8969 | 14504 | 67 | 14502 | 64 | 17 | 26.5625 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4894 | 96.4286 | 98.5739 | 66.0205 | 1728 | 64 | 1728 | 25 | 17 | 68.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.7203 | 94.2529 | 95.1923 | 81.7287 | 574 | 35 | 495 | 25 | 17 | 68.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002complexvar | het | 95.9519 | 92.8205 | 99.3019 | 57.0271 | 2896 | 224 | 2845 | 20 | 17 | 85.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.8736 | 99.8514 | 52.0252 | 13431 | 17 | 13435 | 20 | 17 | 85.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7305 | 89.6851 | 98.1581 | 66.4808 | 1652 | 190 | 1652 | 31 | 17 | 54.8387 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4871 | 99.6937 | 97.3094 | 71.3122 | 651 | 2 | 651 | 18 | 17 | 94.4444 | |
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | homalt | 99.8556 | 99.8408 | 99.8703 | 60.9594 | 26960 | 43 | 26960 | 35 | 17 | 48.5714 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | homalt | 99.8583 | 99.8438 | 99.8728 | 63.3749 | 27480 | 43 | 27480 | 35 | 17 | 48.5714 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e1 | homalt | 99.8597 | 99.8453 | 99.8740 | 63.3660 | 27753 | 43 | 27753 | 35 | 17 | 48.5714 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | * | 98.8758 | 98.7191 | 99.0331 | 88.4730 | 7784 | 101 | 7784 | 76 | 17 | 22.3684 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | * | 98.8775 | 98.7104 | 99.0452 | 88.5497 | 7884 | 103 | 7884 | 76 | 17 | 22.3684 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | het | 99.0951 | 98.7227 | 99.4704 | 74.9167 | 12212 | 158 | 12208 | 65 | 17 | 26.1538 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | het | 99.1156 | 98.7579 | 99.4759 | 76.0299 | 12721 | 160 | 12717 | 67 | 17 | 25.3731 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | het | 99.1170 | 98.7630 | 99.4736 | 76.1158 | 12854 | 161 | 12850 | 68 | 17 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | * | 99.6055 | 99.4531 | 99.7584 | 64.1006 | 24367 | 134 | 24363 | 59 | 17 | 28.8136 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | * | 99.6119 | 99.4647 | 99.7596 | 65.8235 | 24899 | 134 | 24895 | 60 | 17 | 28.3333 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | * | 99.6118 | 99.4660 | 99.7580 | 65.8552 | 25148 | 135 | 25144 | 61 | 17 | 27.8689 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9545 | 92.8719 | 97.1326 | 81.0032 | 899 | 69 | 813 | 24 | 17 | 70.8333 | |
| hfeng-pmm2 | INDEL | * | map_siren | * | 98.8132 | 98.7719 | 98.8544 | 81.7102 | 7319 | 91 | 7335 | 85 | 17 | 20.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8835 | 99.1132 | 98.6549 | 87.3860 | 2347 | 21 | 2347 | 32 | 17 | 53.1250 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5613 | 90.0889 | 99.5008 | 36.1205 | 3445 | 379 | 3588 | 18 | 17 | 94.4444 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8026 | 99.8847 | 99.7206 | 56.2796 | 6065 | 7 | 6068 | 17 | 17 | 100.0000 | |
| jli-custom | INDEL | * | map_siren | * | 98.8895 | 98.5020 | 99.2800 | 80.4395 | 7299 | 111 | 7308 | 53 | 17 | 32.0755 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | het | 95.8678 | 92.7244 | 99.2318 | 57.2218 | 2893 | 227 | 2842 | 22 | 17 | 77.2727 | |
| hfeng-pmm3 | SNP | * | map_l100_m1_e0 | homalt | 99.8518 | 99.8334 | 99.8703 | 60.8633 | 26958 | 45 | 26958 | 35 | 17 | 48.5714 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | homalt | 99.8546 | 99.8365 | 99.8728 | 63.2901 | 27478 | 45 | 27478 | 35 | 17 | 48.5714 | |