PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15151-15200 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 94.0270 | 98.1891 | 90.2033 | 92.2978 | 488 | 9 | 488 | 53 | 18 | 33.9623 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 94.0622 | 98.2283 | 90.2351 | 92.3365 | 499 | 9 | 499 | 54 | 18 | 33.3333 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7848 | 99.4179 | 94.2876 | 66.3675 | 4270 | 25 | 4275 | 259 | 18 | 6.9498 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.1063 | 99.9378 | 98.2885 | 58.1479 | 1608 | 1 | 1608 | 28 | 18 | 64.2857 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.8939 | 99.9277 | 97.8814 | 65.9861 | 1382 | 1 | 1386 | 30 | 18 | 60.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4941 | 94.2149 | 96.8085 | 80.8641 | 912 | 56 | 819 | 27 | 18 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | het | 82.4328 | 77.6224 | 87.8788 | 67.1968 | 111 | 32 | 145 | 20 | 18 | 90.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.2084 | 99.3671 | 65.8495 | 73.6859 | 2669 | 17 | 2713 | 1407 | 18 | 1.2793 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.3847 | 99.0570 | 76.5871 | 59.4598 | 2416 | 23 | 2437 | 745 | 18 | 2.4161 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.9971 | 10.7113 | 83.8926 | 61.0966 | 128 | 1067 | 125 | 24 | 18 | 75.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | het | 80.0362 | 74.4368 | 86.5466 | 93.5607 | 760 | 261 | 817 | 127 | 18 | 14.1732 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | * | 80.1166 | 97.8261 | 67.8363 | 95.0015 | 180 | 4 | 232 | 110 | 18 | 16.3636 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | * | 80.0482 | 97.8378 | 67.7326 | 95.1053 | 181 | 4 | 233 | 111 | 18 | 16.2162 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 27.3019 | 16.0247 | 92.1569 | 56.7063 | 104 | 545 | 235 | 20 | 18 | 90.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9064 | 83.4507 | 95.1253 | 86.7650 | 711 | 141 | 683 | 35 | 18 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3473 | 97.2572 | 99.4621 | 37.7380 | 6560 | 185 | 6472 | 35 | 18 | 51.4286 | |
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | homalt | 97.1180 | 94.7259 | 99.6341 | 71.0042 | 6358 | 354 | 6263 | 23 | 18 | 78.2609 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | het | 74.0125 | 93.3599 | 61.3074 | 94.5783 | 1406 | 100 | 1388 | 876 | 18 | 2.0548 | |
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | homalt | 97.5731 | 95.5507 | 99.6829 | 71.1266 | 7001 | 326 | 6916 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | homalt | 97.6054 | 95.6014 | 99.6952 | 73.2059 | 7281 | 335 | 7195 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | homalt | 97.6162 | 95.6194 | 99.6983 | 73.2617 | 7356 | 337 | 7269 | 22 | 18 | 81.8182 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.3404 | 78.1609 | 67.3267 | 99.9209 | 68 | 19 | 68 | 33 | 18 | 54.5455 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | het | 88.0637 | 97.3607 | 80.3874 | 95.1486 | 332 | 9 | 332 | 81 | 18 | 22.2222 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4957 | 86.7773 | 99.0210 | 60.7081 | 12817 | 1953 | 12846 | 127 | 18 | 14.1732 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | * | 83.2414 | 77.4059 | 90.0285 | 94.1859 | 555 | 162 | 632 | 70 | 18 | 25.7143 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | * | 83.8096 | 78.5059 | 89.8817 | 94.3466 | 599 | 164 | 684 | 77 | 18 | 23.3766 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | * | 83.7200 | 78.4062 | 89.8065 | 94.3591 | 610 | 168 | 696 | 79 | 18 | 22.7848 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | * | 87.1437 | 84.2248 | 90.2721 | 96.4637 | 929 | 174 | 1095 | 118 | 18 | 15.2542 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 48.7196 | 38.0282 | 67.7741 | 83.0040 | 405 | 660 | 408 | 194 | 18 | 9.2784 | |
| gduggal-snapplat | SNP | * | * | hetalt | 96.2665 | 94.8335 | 97.7435 | 52.4025 | 826 | 45 | 823 | 19 | 18 | 94.7368 | |
| gduggal-snapplat | SNP | ti | map_siren | homalt | 97.6833 | 95.5270 | 99.9392 | 52.4384 | 36220 | 1696 | 36180 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | SNP | tv | * | hetalt | 96.2665 | 94.8335 | 97.7435 | 52.4025 | 826 | 45 | 823 | 19 | 18 | 94.7368 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.4324 | 84.8960 | 99.0592 | 66.8074 | 9263 | 1648 | 9266 | 88 | 18 | 20.4545 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.3269 | 85.0549 | 98.5976 | 67.7194 | 5970 | 1049 | 5976 | 85 | 18 | 21.1765 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.5706 | 70.3775 | 91.5264 | 68.8371 | 3300 | 1389 | 3316 | 307 | 18 | 5.8632 | |
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | homalt | 91.2452 | 85.0041 | 98.4754 | 75.7601 | 1043 | 184 | 1421 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | homalt | 91.2669 | 85.0119 | 98.5155 | 76.6062 | 1072 | 189 | 1460 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | homalt | 91.1844 | 84.8556 | 98.5333 | 76.7370 | 1087 | 194 | 1478 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0245 | 100.0000 | 57.5107 | 93.5296 | 1 | 0 | 134 | 99 | 18 | 18.1818 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.3390 | 13.7931 | 38.7097 | 86.2222 | 12 | 75 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 39.6992 | 40.7407 | 38.7097 | 83.7696 | 11 | 16 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 93.6864 | 92.5553 | 94.8454 | 89.7981 | 460 | 37 | 460 | 25 | 18 | 72.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 93.6255 | 92.5197 | 94.7581 | 89.8693 | 470 | 38 | 470 | 26 | 18 | 69.2308 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.7942 | 99.1385 | 98.4523 | 64.5861 | 4258 | 37 | 4262 | 67 | 18 | 26.8657 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9538 | 99.9378 | 97.9890 | 60.2085 | 1608 | 1 | 1608 | 33 | 18 | 54.5455 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9292 | 99.9277 | 97.9505 | 67.9429 | 1382 | 1 | 1386 | 29 | 18 | 62.0690 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7673 | 98.4344 | 97.1092 | 52.3550 | 11254 | 179 | 11287 | 336 | 18 | 5.3571 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 70.7998 | 95.6522 | 56.1983 | 91.6031 | 66 | 3 | 68 | 53 | 18 | 33.9623 | |
| jpowers-varprowl | SNP | tv | HG002compoundhet | het | 92.4509 | 89.4714 | 95.6356 | 62.4569 | 4181 | 492 | 4273 | 195 | 18 | 9.2308 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.0159 | 93.8240 | 98.3126 | 56.1185 | 1109 | 73 | 1107 | 19 | 18 | 94.7368 | |