PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15051-15100 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2761 | 99.4855 | 99.0676 | 75.6554 | 2127 | 11 | 2125 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | het | 97.7103 | 97.2707 | 98.1540 | 83.4501 | 2174 | 61 | 2180 | 41 | 18 | 43.9024 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | homalt | 99.5567 | 99.3365 | 99.7779 | 62.4922 | 8983 | 60 | 8983 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | homalt | 99.5649 | 99.3488 | 99.7820 | 64.8909 | 9154 | 60 | 9154 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | homalt | 99.5691 | 99.3550 | 99.7841 | 64.9074 | 9242 | 60 | 9242 | 20 | 18 | 90.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | * | 96.5485 | 94.7048 | 98.4655 | 65.1748 | 1556 | 87 | 1540 | 24 | 18 | 75.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1850 | 99.4746 | 96.9283 | 66.0880 | 568 | 3 | 568 | 18 | 18 | 100.0000 | |
| raldana-dualsentieon | SNP | * | HG002complexvar | het | 99.8134 | 99.6490 | 99.9784 | 18.1564 | 463863 | 1634 | 463733 | 100 | 18 | 18.0000 | |
| mlin-fermikit | INDEL | D6_15 | * | hetalt | 78.2531 | 64.4238 | 99.6427 | 35.0794 | 5266 | 2908 | 5298 | 19 | 18 | 94.7368 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.9120 | 63.9658 | 99.6350 | 31.9608 | 5155 | 2904 | 5186 | 19 | 18 | 94.7368 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.9120 | 63.9658 | 99.6350 | 31.9608 | 5155 | 2904 | 5186 | 19 | 18 | 94.7368 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.3886 | 90.9836 | 85.9375 | 59.6215 | 111 | 11 | 110 | 18 | 18 | 100.0000 | |
| mlin-fermikit | SNP | * | map_siren | het | 82.6394 | 70.9993 | 98.8447 | 48.1176 | 64603 | 26388 | 64595 | 755 | 18 | 2.3841 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6834 | 100.0000 | 97.4010 | 66.6941 | 786 | 0 | 787 | 21 | 18 | 85.7143 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.6385 | 80.2817 | 79.0055 | 39.4649 | 114 | 28 | 143 | 38 | 18 | 47.3684 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.1234 | 93.2203 | 75.0000 | 71.9101 | 55 | 4 | 75 | 25 | 18 | 72.0000 | |
| ltrigg-rtg2 | SNP | ti | map_siren | homalt | 99.8455 | 99.7415 | 99.9498 | 49.3967 | 37818 | 98 | 37812 | 19 | 18 | 94.7368 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 58.6637 | 41.7103 | 98.8365 | 49.0818 | 1595 | 2229 | 1699 | 20 | 18 | 90.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | * | 57.3803 | 61.8557 | 53.5088 | 92.9889 | 60 | 37 | 61 | 53 | 18 | 33.9623 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.9460 | 70.9983 | 99.7285 | 65.0277 | 6600 | 2696 | 6611 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | het | 75.8984 | 62.7792 | 95.9494 | 75.4582 | 759 | 450 | 758 | 32 | 18 | 56.2500 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | het | 76.7082 | 63.8535 | 96.0432 | 76.9422 | 802 | 454 | 801 | 33 | 18 | 54.5455 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.0308 | 95.2128 | 89.0547 | 65.6410 | 179 | 9 | 179 | 22 | 18 | 81.8182 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4955 | 96.8668 | 94.1624 | 79.5749 | 371 | 12 | 371 | 23 | 18 | 78.2609 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3339 | 99.0472 | 99.6223 | 38.0132 | 7381 | 71 | 7385 | 28 | 18 | 64.2857 | |
| ndellapenna-hhga | SNP | tv | segdup | * | 99.4730 | 99.5546 | 99.3915 | 90.2986 | 8494 | 38 | 8494 | 52 | 18 | 34.6154 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4272 | 98.7275 | 94.2317 | 67.6240 | 1862 | 24 | 1944 | 119 | 18 | 15.1261 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 88.1620 | 79.3519 | 99.1726 | 31.2754 | 10922 | 2842 | 2517 | 21 | 18 | 85.7143 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.9326 | 91.0397 | 99.1732 | 34.1898 | 2154 | 212 | 2159 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7429 | 98.1158 | 99.3780 | 55.1561 | 5624 | 108 | 5752 | 36 | 18 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | * | 98.0543 | 96.8698 | 99.2681 | 50.7658 | 4642 | 150 | 4340 | 32 | 18 | 56.2500 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.2394 | 90.3138 | 96.3610 | 69.7623 | 662 | 71 | 662 | 25 | 18 | 72.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | het | 98.0825 | 99.4220 | 96.7787 | 93.6753 | 688 | 4 | 691 | 23 | 18 | 78.2609 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1150 | 99.9061 | 98.3364 | 68.3163 | 1064 | 1 | 1064 | 18 | 18 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.1538 | 100.0000 | 88.9535 | 77.1580 | 153 | 0 | 153 | 19 | 18 | 94.7368 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | het | 90.4950 | 97.8587 | 84.1621 | 96.2262 | 914 | 20 | 914 | 172 | 18 | 10.4651 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | het | 88.8718 | 97.2020 | 81.8567 | 93.7753 | 1737 | 50 | 1737 | 385 | 18 | 4.6753 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | het | 89.1930 | 97.4227 | 82.2454 | 94.1018 | 1890 | 50 | 1890 | 408 | 18 | 4.4118 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | het | 89.2982 | 97.4555 | 82.4010 | 94.1598 | 1915 | 50 | 1915 | 409 | 18 | 4.4010 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5775 | 66.5710 | 95.8678 | 49.7925 | 464 | 233 | 464 | 20 | 18 | 90.0000 | |
| hfeng-pmm3 | SNP | * | map_l125_m0_e0 | * | 99.2955 | 99.2468 | 99.3441 | 74.5016 | 19239 | 146 | 19236 | 127 | 18 | 14.1732 | |
| hfeng-pmm3 | SNP | * | map_siren | het | 99.6837 | 99.5824 | 99.7852 | 54.5786 | 90611 | 380 | 90597 | 195 | 18 | 9.2308 | |
| hfeng-pmm3 | SNP | ti | * | het | 99.9388 | 99.9112 | 99.9664 | 17.2454 | 1280753 | 1138 | 1280703 | 430 | 18 | 4.1861 | |
| hfeng-pmm3 | SNP | tv | * | homalt | 99.9887 | 99.9854 | 99.9920 | 20.6594 | 377068 | 55 | 377060 | 30 | 18 | 60.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.7368 | 98.1043 | 91.5929 | 67.5287 | 207 | 4 | 207 | 19 | 18 | 94.7368 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.8585 | 94.6327 | 99.1916 | 50.2361 | 2821 | 160 | 2822 | 23 | 18 | 78.2609 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | * | 99.0843 | 98.9362 | 99.2329 | 79.6567 | 11904 | 128 | 11901 | 92 | 18 | 19.5652 | |
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | het | 99.2306 | 98.8613 | 99.6028 | 70.2477 | 18058 | 208 | 18054 | 72 | 18 | 25.0000 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | het | 99.2396 | 98.8716 | 99.6103 | 71.4782 | 18663 | 213 | 18659 | 73 | 18 | 24.6575 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | het | 99.2454 | 98.8841 | 99.6094 | 71.5149 | 18874 | 213 | 18870 | 74 | 18 | 24.3243 | |