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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 274 275 276 277 278 279 280 281 282 ... 1720 1721 » 13851-13900 / 86044 show all
rpoplin-dv42	SNP	ti	map_l150_m2_e0	homalt	99.3810	99.0809	99.6830	73.3835	7546	70	7546	24	23	95.8333
rpoplin-dv42	SNP	ti	map_l150_m2_e1	homalt	99.3872	99.0901	99.6862	73.4415	7623	70	7623	24	23	95.8333
raldana-dualsentieon	SNP	*	map_l100_m1_e0	*	99.3579	99.3895	99.3263	63.6563	71961	442	71950	488	23	4.7131
raldana-dualsentieon	SNP	*	map_l100_m2_e0	*	99.3627	99.3970	99.3284	65.5143	73518	446	73507	497	23	4.6278
raldana-dualsentieon	SNP	*	map_l100_m2_e1	*	99.3646	99.4032	99.3261	65.5411	74291	446	74280	504	23	4.5635
raldana-dualsentieon	SNP	ti	map_siren	*	99.5625	99.5516	99.5734	52.8084	99905	450	99890	428	23	5.3738
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.0405	84.0481	99.3020	38.2843	3214	610	3272	23	23	100.0000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.0478	92.5550	97.6786	60.5911	1094	88	1094	26	23	88.4615
rpoplin-dv42	INDEL	D1_5	HG002complexvar	homalt	99.7026	99.6414	99.7639	58.4249	10560	38	10565	25	23	92.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	81.2500	70.8752	95.1830	49.0677	494	203	494	25	23	92.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.7644	99.0244	89.0351	90.6863	203	2	203	25	23	92.0000
jlack-gatk	SNP	*	map_l250_m0_e0	het	89.1456	97.3440	82.2210	96.2201	1466	40	1466	317	23	7.2555
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4066	99.4274	99.3858	50.7439	11807	68	11812	73	23	31.5068
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	*	97.1912	96.4859	97.9070	66.9992	1263	46	1263	27	23	85.1852
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.7644	99.0244	89.0351	90.6863	203	2	203	25	23	92.0000
hfeng-pmm1	SNP	ti	map_l150_m1_e0	*	99.3490	99.1071	99.5921	73.5929	19536	176	19532	80	23	28.7500
hfeng-pmm1	SNP	ti	map_l150_m2_e0	*	99.3647	99.1322	99.5983	75.0541	20334	178	20330	82	23	28.0488
hfeng-pmm1	SNP	ti	map_l150_m2_e1	*	99.3663	99.1362	99.5975	75.1263	20544	179	20540	83	23	27.7108
hfeng-pmm2	SNP	*	map_l100_m0_e0	het	99.0069	99.2124	98.8022	73.2241	21038	167	21034	255	23	9.0196
hfeng-pmm2	SNP	*	map_l150_m1_e0	het	98.9149	99.1251	98.7057	78.5477	19147	169	19141	251	23	9.1634
hfeng-pmm2	SNP	*	map_l150_m2_e0	het	98.9416	99.1556	98.7286	79.5932	19963	170	19957	257	23	8.9494
hfeng-pmm2	SNP	*	map_l150_m2_e1	het	98.9487	99.1652	98.7332	79.6403	20193	170	20187	259	23	8.8803
hfeng-pmm2	SNP	ti	map_l125_m1_e0	*	99.4105	99.4648	99.3563	71.7136	29178	157	29174	189	23	12.1693
hfeng-pmm2	SNP	ti	map_l125_m2_e0	*	99.4203	99.4745	99.3661	73.2412	30099	159	30095	192	23	11.9792
hfeng-pmm2	SNP	ti	map_l125_m2_e1	*	99.4245	99.4799	99.3693	73.2743	30410	159	30406	193	23	11.9171
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.9134	97.1029	98.7375	60.0294	1877	56	1877	24	23	95.8333
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.2485	95.8254	94.6785	79.7485	505	22	427	24	23	95.8333
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	88.8218	91.3043	86.4706	35.3612	147	14	147	23	23	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2193	95.0054	99.5389	60.9375	7989	420	7988	37	23	62.1622
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.3335	93.6712	99.1515	51.7685	3271	221	3272	28	23	82.1429
hfeng-pmm3	SNP	*	map_l150_m1_e0	*	99.4475	99.3825	99.5125	74.0748	30420	189	30414	149	23	15.4362
hfeng-pmm3	SNP	*	map_l150_m2_e0	*	99.4612	99.4035	99.5190	75.5411	31662	190	31656	153	23	15.0327
hfeng-pmm3	SNP	*	map_l150_m2_e1	*	99.4641	99.4070	99.5212	75.5898	32019	191	32013	154	23	14.9351
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.8868	97.0512	98.7368	59.9494	1876	57	1876	24	23	95.8333
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.3481	96.0152	94.6903	79.5197	506	21	428	24	23	95.8333
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4189	97.8723	96.9697	59.4335	736	16	736	23	23	100.0000
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.2997	91.1929	99.7939	58.4384	15480	1495	15495	32	23	71.8750
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.2997	91.1929	99.7939	58.4384	15480	1495	15495	32	23	71.8750
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9506	99.6061	57.9561	6069	3	6069	24	23	95.8333
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	87.3498	78.5324	98.3974	44.5432	1295	354	1535	25	23	92.0000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	91.7822	88.7139	95.0704	56.7337	676	86	675	35	23	65.7143
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	het	58.4929	47.6692	75.6757	61.6761	317	348	308	99	23	23.2323
ckim-isaac	INDEL	I6_15	HG002compoundhet	hetalt	82.1207	69.9426	99.4336	21.1377	5971	2566	5969	34	23	67.6471
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.5818	90.2196	97.2043	65.2466	904	98	904	26	23	88.4615
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.5138	96.0416	99.0318	51.5497	2863	118	2864	28	23	82.1429
dgrover-gatk	SNP	*	map_l150_m0_e0	het	98.4616	98.7657	98.1593	84.6929	7842	98	7839	147	23	15.6463
dgrover-gatk	SNP	tv	map_l100_m0_e0	*	99.0852	99.1880	98.9825	72.6937	10994	90	10993	113	23	20.3540
dgrover-gatk	INDEL	D16_PLUS	*	homalt	98.8856	99.6454	98.1374	70.5317	1686	6	1686	32	23	71.8750
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.4945	99.5196	97.4902	74.7924	1243	6	1243	32	23	71.8750

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