PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
1301-1350 / 86044 show all
gduggal-bwavardINDELD16_PLUSHG002compoundhet*
17.4062
15.1645
20.4258
36.2202
355198635513831372
99.2046
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
51.0900
47.6832
55.0210
72.0588
16981863170413931371
98.4207
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
52.6451
49.8736
55.7428
73.7700
17761785178614181371
96.6855
dgrover-gatkINDEL*HG002compoundhet*
95.1627
94.9733
95.3528
63.3096
2845415062833613811370
99.2035
gduggal-bwavardINDELD16_PLUSHG002compoundhethet
32.7572
85.1852
20.2773
36.0547
3456035113801369
99.2029
anovak-vgSNPtimap_l150_m2_e1*
79.8681
86.0107
74.5445
79.9452
1782428991767360351369
22.6843
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.2963
71.7737
88.5804
40.3166
989438911072013821368
98.9870
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
41.7793
36.0397
49.6933
42.7847
14162513145814761368
92.6829
anovak-vgSNPtimap_l100_m0_e0het
78.0640
88.2071
70.0131
76.8266
1233416491226052511367
26.0331
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50*
92.1428
89.6098
94.8232
41.9297
3279038023234817661366
77.3499
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
62.4499
90.8511
47.5768
61.6650
1281129128614171364
96.2597
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
74.2485
93.1298
61.7328
60.2144
1586117329920451364
66.6993
jpowers-varprowlSNPtv**
99.3067
99.4773
99.1367
27.6192
964620506996486284021363
16.2223
anovak-vgSNPtimap_l150_m2_e0*
79.7989
85.9302
74.4843
79.9053
1762628861747759871363
22.7660
ghariani-varprowlINDELD16_PLUSHG002compoundhethet
34.2987
89.1358
21.2349
37.1418
3614436813651360
99.6337
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_diTR_51to200*
18.9766
17.5155
20.7036
55.4928
368173335913751359
98.8364
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200het
25.7159
56.7347
16.6259
49.0343
27821227213641359
99.6334
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_diTR_51to200het
28.5438
64.6939
18.3115
55.1706
31717330813741358
98.8355
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.8154
82.7107
87.0300
49.4577
91661916916613661354
99.1215
ckim-isaacINDEL*HG002complexvar*
91.9300
88.4153
95.7357
48.5598
6802589136703729861352
45.2780
ciseli-customSNP*map_l125_m1_e0homalt
88.0175
86.4537
89.6388
65.9316
1461522901456916841350
80.1663
gduggal-snapfbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
54.4986
47.4734
63.9642
60.7084
47825291549930981349
43.5442
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.4692
61.7158
65.3251
67.3472
41222557574630501349
44.2295
ghariani-varprowlSNPtv**
98.9190
99.7874
98.0655
30.2667
9676202062967900190931348
7.0602
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
70.9699
75.4662
66.9793
63.9738
44111434478523591346
57.0581
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
70.9699
75.4662
66.9793
63.9738
44111434478523591346
57.0581
jpowers-varprowlINDELD16_PLUSHG002compoundhethet
32.6811
83.4568
20.3190
35.8955
3386734413491346
99.7776
gduggal-snapplatSNP*map_siren*
96.8913
95.7977
98.0103
67.7918
140083614514013928451340
47.1002
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.0386
32.6054
48.6345
60.4703
12992685130013731338
97.4508
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1202
97.0035
95.2529
60.1354
5396416675524027531338
48.6015
mlin-fermikitSNP*map_l125_m0_e0*
52.1003
37.9727
82.9686
58.9613
736112024735615101338
88.6093
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.4596
98.1094
87.4251
55.1844
9341180933713431337
99.5532
ciseli-customSNPtimap_l100_m2_e1*
86.3257
83.3424
89.5306
71.0284
4124282434117648151336
27.7466
mlin-fermikitSNP*map_l125_m0_e0homalt
56.5095
47.8546
68.9863
54.6729
32123500321214441335
92.4515
anovak-vgSNPtimap_l150_m2_e1het
76.0299
89.7810
65.9316
81.6800
1168513301160059941333
22.2389
mlin-fermikitSNP*HG002compoundhet*
92.7673
91.9758
93.5725
42.5829
2375020722375916321332
81.6176
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
88.3620
96.8555
81.2380
64.5325
5421176594513731329
96.7953
anovak-vgSNPtimap_l150_m1_e0*
79.4593
85.7346
74.0400
78.6204
1690028121675658751329
22.6213
anovak-vgSNPtimap_l150_m2_e0het
75.9641
89.7213
65.8649
81.6317
1155713241147359461327
22.3175
ciseli-customSNPtimap_l100_m2_e0*
86.2627
83.2663
89.4829
71.0430
4076881934070447841327
27.7383
gduggal-snapfbSNP*HG002complexvar*
99.1200
99.6105
98.6343
21.7486
7514472938752277104161326
12.7304
anovak-vgINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
37.7291
27.7742
58.8070
42.9448
4281113229716091324
82.2871
anovak-vgSNPtvmap_l100_m2_e1*
83.6965
89.4751
78.6189
71.8943
2262226612257761401324
21.5635
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
52.1197
61.4379
45.2558
24.9536
9459109713271322
99.6232
anovak-vgSNPtvmap_l100_m2_e0*
83.6288
89.4260
78.5375
71.8835
2238626472235161081319
21.5946
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.6865
93.7182
91.6773
55.0764
2376615932369421511318
61.2738
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
54.7528
73.3333
43.6844
58.3973
1034376104113421318
98.2116
ciseli-customSNPtimap_l100_m1_e0*
86.1026
83.0465
89.3922
69.2811
3980581263974247161317
27.9262
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
64.2811
94.3173
48.7547
73.3962
127877129213581314
96.7599
gduggal-bwaplatSNP***
98.8646
98.0471
99.6958
26.6546
299496559654299552391391314
14.3779