PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13251-13300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.2621 | 100.0000 | 83.9286 | 99.8242 | 1 | 0 | 141 | 27 | 26 | 96.2963 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | * | 90.9201 | 97.4012 | 85.2478 | 91.8224 | 4460 | 119 | 4438 | 768 | 26 | 3.3854 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 56.1021 | 47.7477 | 68.0000 | 49.7487 | 106 | 116 | 136 | 64 | 26 | 40.6250 | |
| gduggal-snapfb | INDEL | * | segdup | het | 92.4787 | 90.9277 | 94.0836 | 94.1056 | 1333 | 133 | 1463 | 92 | 26 | 28.2609 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0497 | 90.1554 | 60.0000 | 90.1623 | 348 | 38 | 291 | 194 | 26 | 13.4021 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.3138 | 61.2245 | 97.8261 | 47.4389 | 300 | 190 | 1305 | 29 | 26 | 89.6552 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | het | 97.4938 | 98.1141 | 96.8813 | 79.0298 | 4318 | 83 | 4318 | 139 | 26 | 18.7050 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 77.8626 | 66.2338 | 94.4444 | 82.1887 | 1428 | 728 | 1428 | 84 | 26 | 30.9524 | |
| gduggal-bwaplat | INDEL | * | map_siren | * | 85.3786 | 75.0202 | 99.0556 | 89.6958 | 5559 | 1851 | 5559 | 53 | 26 | 49.0566 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | homalt | 99.8182 | 99.7420 | 99.8945 | 62.4790 | 27452 | 71 | 27451 | 29 | 26 | 89.6552 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | homalt | 99.8200 | 99.7446 | 99.8955 | 62.4711 | 27725 | 71 | 27724 | 29 | 26 | 89.6552 | |
| ltrigg-rtg1 | SNP | ti | map_siren | homalt | 99.8522 | 99.7758 | 99.9287 | 51.0640 | 37831 | 85 | 37826 | 27 | 26 | 96.2963 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3659 | 98.8427 | 99.8947 | 68.5558 | 30405 | 356 | 30350 | 32 | 26 | 81.2500 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.5176 | 97.3637 | 99.6992 | 42.0335 | 9270 | 251 | 9282 | 28 | 26 | 92.8571 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7127 | 92.2652 | 89.2116 | 81.5184 | 334 | 28 | 215 | 26 | 26 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8004 | 97.8301 | 97.7707 | 70.7090 | 1578 | 35 | 1535 | 35 | 26 | 74.2857 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2132 | 98.0073 | 98.4200 | 74.3056 | 2410 | 49 | 2367 | 38 | 26 | 68.4211 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 94.6866 | 95.7300 | 93.6658 | 88.0554 | 695 | 31 | 695 | 47 | 26 | 55.3191 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 94.8187 | 95.8115 | 93.8462 | 88.6430 | 732 | 32 | 732 | 48 | 26 | 54.1667 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3148 | 95.2850 | 99.4329 | 24.6012 | 4547 | 225 | 4559 | 26 | 26 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4597 | 95.3612 | 97.5838 | 52.4639 | 1254 | 61 | 1252 | 31 | 26 | 83.8710 | |
| jmaeng-gatk | SNP | ti | HG002complexvar | homalt | 99.3419 | 98.7072 | 99.9848 | 18.4737 | 190962 | 2501 | 190952 | 29 | 26 | 89.6552 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0878 | 99.0624 | 99.1133 | 72.7315 | 30851 | 292 | 30851 | 276 | 26 | 9.4203 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0878 | 99.0624 | 99.1133 | 72.7315 | 30851 | 292 | 30851 | 276 | 26 | 9.4203 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.1526 | 93.3076 | 95.0131 | 86.3196 | 725 | 52 | 724 | 38 | 26 | 68.4211 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.9052 | 98.1726 | 99.6488 | 74.4202 | 11067 | 206 | 11067 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | homalt | 98.9410 | 98.2306 | 99.6618 | 76.3825 | 11492 | 207 | 11492 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | homalt | 98.9483 | 98.2413 | 99.6655 | 76.3898 | 11619 | 208 | 11619 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4411 | 99.0590 | 99.8261 | 62.5525 | 17791 | 169 | 17791 | 31 | 26 | 83.8710 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.6549 | 93.5593 | 97.8465 | 65.3460 | 2484 | 171 | 2499 | 55 | 26 | 47.2727 | |
| jli-custom | SNP | ti | HG002complexvar | homalt | 99.9648 | 99.9478 | 99.9819 | 18.3860 | 193362 | 101 | 193356 | 35 | 26 | 74.2857 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | * | 99.2462 | 99.0572 | 99.4359 | 66.9313 | 15865 | 151 | 15864 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_l125_m2_e0 | * | 99.2648 | 99.0782 | 99.4521 | 69.0688 | 16337 | 152 | 16336 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_l125_m2_e1 | * | 99.2722 | 99.0875 | 99.4576 | 69.1406 | 16505 | 152 | 16504 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_siren | het | 99.4790 | 99.4407 | 99.5172 | 56.5108 | 28449 | 160 | 28447 | 138 | 26 | 18.8406 | |
| ckim-dragen | SNP | * | HG002compoundhet | * | 99.7929 | 99.7831 | 99.8027 | 41.5217 | 25766 | 56 | 25804 | 51 | 26 | 50.9804 | |
| ckim-dragen | SNP | * | map_l150_m0_e0 | het | 96.9776 | 97.9975 | 95.9788 | 84.1657 | 7781 | 159 | 7781 | 326 | 26 | 7.9755 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.3610 | 99.7108 | 89.5561 | 64.7005 | 1379 | 4 | 1372 | 160 | 26 | 16.2500 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7959 | 97.7681 | 86.5114 | 40.4602 | 3373 | 77 | 3380 | 527 | 26 | 4.9336 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | het | 70.2747 | 63.3947 | 78.8298 | 84.9536 | 2790 | 1611 | 2789 | 749 | 26 | 3.4713 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.1753 | 97.7901 | 88.9764 | 85.5927 | 354 | 8 | 226 | 28 | 26 | 92.8571 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.1305 | 99.0001 | 99.2612 | 79.9407 | 10693 | 108 | 10748 | 80 | 26 | 32.5000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6679 | 92.1212 | 97.3595 | 41.8524 | 304 | 26 | 1143 | 31 | 26 | 83.8710 | |
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | het | 93.8692 | 89.3617 | 98.8556 | 50.9675 | 42 | 5 | 2505 | 29 | 26 | 89.6552 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 88.8889 | 59.7015 | 47.6562 | 40 | 5 | 40 | 27 | 26 | 96.2963 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 53.5433 | 56.6667 | 50.7463 | 97.1158 | 34 | 26 | 34 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 54.4118 | 56.0606 | 52.8571 | 97.3242 | 37 | 29 | 37 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 54.4118 | 56.0606 | 52.8571 | 97.3987 | 37 | 29 | 37 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 49.1803 | 50.8475 | 47.6190 | 48.7805 | 30 | 29 | 30 | 33 | 26 | 78.7879 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | * | 72.2501 | 57.4634 | 97.2832 | 92.5200 | 6914 | 5118 | 6911 | 193 | 26 | 13.4715 | |