PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13151-13200 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.5150 | 99.6497 | 95.4698 | 67.0354 | 569 | 2 | 569 | 27 | 27 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | het | 97.4340 | 98.5598 | 96.3335 | 79.4732 | 8144 | 119 | 8145 | 310 | 27 | 8.7097 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | * | 96.5488 | 96.9963 | 96.1054 | 82.0770 | 3423 | 106 | 3430 | 139 | 27 | 19.4245 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 40.9756 | 28.1879 | 75.0000 | 50.6849 | 42 | 107 | 81 | 27 | 27 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.8529 | 57.2932 | 96.3338 | 35.0041 | 762 | 568 | 762 | 29 | 27 | 93.1034 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | * | 89.9579 | 95.1613 | 85.2941 | 90.0943 | 295 | 15 | 493 | 85 | 27 | 31.7647 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | homalt | 45.0525 | 29.6785 | 93.4732 | 26.9165 | 360 | 853 | 401 | 28 | 27 | 96.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | * | 60.8583 | 72.0000 | 52.7027 | 87.7888 | 18 | 7 | 39 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | het | 63.8563 | 93.3333 | 48.5294 | 87.8571 | 14 | 1 | 33 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 37.8203 | 79.7927 | 24.7836 | 90.1732 | 308 | 78 | 315 | 956 | 27 | 2.8243 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | homalt | 97.9102 | 96.1077 | 99.7817 | 66.1808 | 16247 | 658 | 15999 | 35 | 27 | 77.1429 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | het | 85.1353 | 81.5550 | 89.0443 | 91.4683 | 986 | 223 | 1146 | 141 | 27 | 19.1489 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 43.8001 | 29.2941 | 86.7647 | 51.6014 | 249 | 601 | 236 | 36 | 27 | 75.0000 | |
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | het | 90.1652 | 97.6150 | 83.7719 | 93.3586 | 573 | 14 | 573 | 111 | 27 | 24.3243 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7326 | 95.8640 | 87.9427 | 88.9869 | 1043 | 45 | 1043 | 143 | 27 | 18.8811 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | * | 91.9463 | 95.8880 | 88.3159 | 89.5819 | 1096 | 47 | 1096 | 145 | 27 | 18.6207 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 91.0832 | 98.8312 | 84.4617 | 91.0642 | 761 | 9 | 761 | 140 | 27 | 19.2857 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | het | 84.2801 | 77.7302 | 92.0354 | 96.9671 | 726 | 208 | 728 | 63 | 27 | 42.8571 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.0378 | 96.3964 | 51.3872 | 89.5473 | 428 | 16 | 426 | 403 | 27 | 6.6998 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.4427 | 98.5075 | 57.2852 | 93.2156 | 462 | 7 | 460 | 343 | 27 | 7.8717 | |
| gduggal-snapplat | INDEL | * | segdup | * | 77.9673 | 71.4789 | 85.7514 | 96.5099 | 1827 | 729 | 1980 | 329 | 27 | 8.2067 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 79.8224 | 95.4545 | 68.5897 | 91.7504 | 105 | 5 | 107 | 49 | 27 | 55.1020 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | het | 91.3804 | 97.1448 | 86.2618 | 95.0573 | 1463 | 43 | 1463 | 233 | 27 | 11.5880 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002complexvar | homalt | 82.5036 | 76.0518 | 90.1515 | 62.3395 | 235 | 74 | 238 | 26 | 26 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4317 | 98.3269 | 90.8333 | 89.6462 | 764 | 13 | 763 | 77 | 26 | 33.7662 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4271 | 99.0479 | 99.8092 | 60.5686 | 17789 | 171 | 17789 | 34 | 26 | 76.4706 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6587 | 97.5693 | 70.2096 | 85.8214 | 8911 | 222 | 8977 | 3809 | 26 | 0.6826 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.6587 | 97.5693 | 70.2096 | 85.8214 | 8911 | 222 | 8977 | 3809 | 26 | 0.6826 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 18.3177 | 25.9009 | 14.1693 | 78.4001 | 345 | 987 | 365 | 2211 | 26 | 1.1759 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 42.3952 | 29.7723 | 73.6000 | 86.9452 | 170 | 401 | 184 | 66 | 26 | 39.3939 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.0395 | 80.9340 | 98.9493 | 51.2411 | 5459 | 1286 | 5462 | 58 | 26 | 44.8276 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 42.3423 | 57.3171 | 33.5714 | 78.0220 | 47 | 35 | 47 | 93 | 26 | 27.9570 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.9467 | 95.9574 | 74.6082 | 62.8854 | 451 | 19 | 476 | 162 | 26 | 16.0494 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | homalt | 93.2963 | 89.3836 | 97.5673 | 70.4493 | 1044 | 124 | 1123 | 28 | 26 | 92.8571 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | het | 87.9923 | 98.4375 | 79.5511 | 91.6753 | 189 | 3 | 319 | 82 | 26 | 31.7073 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0218 | 96.6030 | 99.4830 | 58.8566 | 9754 | 343 | 9622 | 50 | 26 | 52.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | * | 79.8374 | 72.4590 | 88.8889 | 71.7489 | 221 | 84 | 224 | 28 | 26 | 92.8571 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.7788 | 99.0616 | 80.4299 | 50.4389 | 4645 | 44 | 4677 | 1138 | 26 | 2.2847 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 38.2939 | 34.3333 | 43.2873 | 81.8899 | 1030 | 1970 | 1222 | 1601 | 26 | 1.6240 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 90.8745 | 98.7603 | 84.1549 | 90.4911 | 717 | 9 | 717 | 135 | 26 | 19.2593 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 91.1836 | 98.8220 | 84.6413 | 91.0008 | 755 | 9 | 755 | 137 | 26 | 18.9781 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 51.0719 | 55.5556 | 47.2579 | 93.7840 | 400 | 320 | 405 | 452 | 26 | 5.7522 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9783 | 95.8147 | 98.1704 | 65.8532 | 1717 | 75 | 1717 | 32 | 26 | 81.2500 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.9218 | 93.7603 | 94.0840 | 81.1239 | 571 | 38 | 493 | 31 | 26 | 83.8710 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | * | 97.9708 | 97.5460 | 98.3993 | 98.1181 | 3498 | 88 | 3504 | 57 | 26 | 45.6140 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | het | 97.6497 | 97.6497 | 97.6497 | 86.6731 | 1745 | 42 | 1745 | 42 | 26 | 61.9048 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3240 | 95.7792 | 96.8750 | 60.5835 | 1180 | 52 | 1178 | 38 | 26 | 68.4211 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9394 | 98.6710 | 99.2092 | 50.5195 | 3638 | 49 | 3638 | 29 | 26 | 89.6552 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | homalt | 99.5456 | 99.3309 | 99.7613 | 68.8663 | 11282 | 76 | 11282 | 27 | 26 | 96.2963 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | homalt | 99.5496 | 99.3367 | 99.7633 | 68.9111 | 11382 | 76 | 11382 | 27 | 26 | 96.2963 | |