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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 258 259 260 261 262 263 264 265 266 ... 1720 1721 » 13051-13100 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	HG002compoundhet	homalt	92.8474	93.6170	92.0904	71.4055	308	21	326	28	27	96.4286
ndellapenna-hhga	INDEL	*	map_l100_m2_e1	het	97.2372	97.3111	97.1634	84.0911	2280	63	2295	67	27	40.2985
ndellapenna-hhga	INDEL	*	segdup	het	97.9748	98.6357	97.3226	94.1248	1446	20	1454	40	27	67.5000
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	74.2193	59.3086	99.1453	28.8754	4049	2778	3712	32	27	84.3750
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	82.9391	77.0624	89.7862	73.3037	383	114	378	43	27	62.7907
qzeng-custom	INDEL	D1_5	map_l100_m1_e0	het	89.6970	83.6228	96.7227	89.7617	1011	198	1151	39	27	69.2308
qzeng-custom	INDEL	D1_5	map_l100_m2_e0	het	89.9373	83.9968	96.7820	89.9588	1055	201	1203	40	27	67.5000
qzeng-custom	INDEL	D1_5	map_l100_m2_e1	het	89.9622	84.0694	96.7434	89.9976	1066	202	1218	41	27	65.8537
qzeng-custom	INDEL	D1_5	map_l125_m1_e0	*	86.3838	78.0331	96.7359	91.0029	849	239	978	33	27	81.8182
qzeng-custom	INDEL	D1_5	map_l125_m2_e0	*	86.6114	78.3027	96.8927	91.2636	895	248	1029	33	27	81.8182
qzeng-custom	INDEL	D1_5	map_l125_m2_e1	*	86.7845	78.5653	96.9245	91.3188	909	248	1040	33	27	81.8182
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	94.8280	94.2961	95.3659	70.4398	777	47	782	38	27	71.0526
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	91.0757	96.0870	86.5613	76.5524	221	9	219	34	27	79.4118
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	95.2238	96.6140	93.8731	40.3394	428	15	429	28	27	96.4286
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.8965	92.6829	87.2727	88.8945	190	15	192	28	27	96.4286
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.8965	92.6829	87.2727	88.8945	190	15	192	28	27	96.4286
mlin-fermikit	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	81.9762	69.7710	99.3570	62.1268	4143	1795	4172	27	27	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	*	99.1869	98.5512	99.8308	67.6959	28910	425	28910	49	27	55.1020
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	*	99.2019	98.5888	99.8226	69.6014	29831	427	29831	53	27	50.9434
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	*	99.2034	98.5901	99.8245	69.6481	30138	431	30138	53	27	50.9434
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2704	99.1149	99.4264	74.8452	5375	48	5373	31	27	87.0968
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2704	99.1149	99.4264	74.8452	5375	48	5373	31	27	87.0968
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	44.0143	35.8696	56.9444	58.6207	33	59	41	31	27	87.0968
qzeng-custom	SNP	tv	segdup	*	98.3829	98.6521	98.1152	93.4371	8417	115	8381	161	27	16.7702
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7452	99.9341	99.5570	56.8831	6068	4	6068	27	27	100.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.0672	96.6017	99.5778	24.0929	6595	232	6604	28	27	96.4286
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	81.9277	95.7746	71.5789	51.0309	68	3	68	27	27	100.0000
jli-custom	INDEL	I1_5	HG002complexvar	*	99.4264	98.9689	99.8882	55.8919	33019	344	33052	37	27	72.9730
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.8525	100.0000	92.0354	67.8977	311	0	312	27	27	100.0000
jpowers-varprowl	INDEL	*	func_cds	het	90.4977	93.4579	87.7193	46.9767	200	14	200	28	27	96.4286
jpowers-varprowl	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	10.1232	5.6911	45.7627	90.8385	28	464	27	32	27	84.3750
jpowers-varprowl	INDEL	*	map_l125_m0_e0	het	92.6995	93.0153	92.3858	91.5475	546	41	546	45	27	60.0000
jpowers-varprowl	INDEL	D1_5	map_l125_m1_e0	*	94.5370	93.8419	95.2425	86.5208	1021	67	1021	51	27	52.9412
jpowers-varprowl	INDEL	D1_5	map_l125_m2_e0	*	94.6208	93.8758	95.3778	87.2043	1073	70	1073	52	27	51.9231
jpowers-varprowl	INDEL	D1_5	map_l125_m2_e1	het	94.7368	95.8442	93.6548	88.7251	738	32	738	50	27	54.0000
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	*	99.3155	98.8275	99.8083	56.5736	47369	562	47371	91	27	29.6703
ltrigg-rtg2	INDEL	*	HG002complexvar	homalt	99.4106	98.9640	99.8613	51.7784	26746	280	26631	37	27	72.9730
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.1085	91.0009	97.4359	68.1633	1982	196	1976	52	27	51.9231
jli-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5883	99.8077	99.3700	59.7371	55524	107	55520	352	27	7.6705
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	96.7542	99.0148	94.5946	84.0288	603	6	525	30	27	90.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	93.7778	100.0000	88.2845	69.8232	211	0	211	28	27	96.4286
jmaeng-gatk	SNP	*	map_l125_m0_e0	het	79.8036	68.1775	96.2100	91.1308	8634	4030	8631	340	27	7.9412
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.6583	87.5470	98.4034	64.1001	1863	265	1849	30	27	90.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2807	95.0784	99.5875	32.3304	6491	336	6518	27	27	100.0000
rpoplin-dv42	SNP	tv	map_l250_m2_e0	het	97.8098	97.8351	97.7846	87.2638	1898	42	1898	43	27	62.7907
rpoplin-dv42	INDEL	*	map_l100_m2_e0	*	97.9477	97.5088	98.3906	98.2302	3601	92	3607	59	27	45.7627
rpoplin-dv42	SNP	*	map_l100_m0_e0	homalt	99.3564	98.9759	99.7398	62.7443	11501	119	11501	30	27	90.0000
rpoplin-dv42	SNP	*	map_l250_m0_e0	*	97.4806	96.9555	98.0114	92.0139	2070	65	2070	42	27	64.2857
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	homalt	99.8477	99.8959	99.7995	52.5914	13434	14	13438	27	27	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.7835	87.9479	98.1818	64.9979	1620	222	1620	30	27	90.0000

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