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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
1251-1300 / 86044 show all
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
66.8599
89.2948
53.4347
70.0637
1760211175815321441
94.0601
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.8599
89.2948
53.4347
70.0637
1760211175815321441
94.0601
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.4567
75.6715
88.1998
59.8076
1214339041227316421435
87.3934
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.3970
97.7723
95.0598
71.0826
298016792963315401434
93.1169
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.3970
97.7723
95.0598
71.0826
298016792963315401434
93.1169
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200het
28.8874
67.7551
18.3569
52.9208
33215832414411432
99.3754
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
46.8191
40.0480
56.3456
64.3182
20022997198915411431
92.8618
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
46.8191
40.0480
56.3456
64.3182
20022997198915411431
92.8618
ndellapenna-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5223
75.9394
87.9912
60.0478
1218638611236116871429
84.7066
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.6750
96.3113
77.1544
58.1338
4282164497814741427
96.8114
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
79.3723
90.3851
70.7516
51.9765
3497372346414321427
99.6508
anovak-vgSNP*map_l125_m0_e0het
76.4858
87.7448
67.7876
82.7028
1111215521100652301427
27.2849
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
20.0419
16.9448
24.5243
50.5230
467228946414281427
99.9300
gduggal-snapvardSNPtiHG002compoundhethet
77.4625
83.1755
72.4839
53.3720
79051599909634531426
41.2974
gduggal-snapvardSNPtv*het
98.6977
99.0250
98.3726
31.6253
585935576958336696511423
14.7446
ciseli-customINDELI1_5HG002compoundhethet
44.8253
57.3616
36.7858
80.5882
48736299817151422
82.9155
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
84.4065
96.1747
75.2044
56.2444
3721148441614561419
97.4588
ghariani-varprowlINDELD16_PLUSHG002compoundhet*
18.0085
15.8906
20.7778
37.7809
372196937414261417
99.3689
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.7988
86.5556
89.0781
44.8149
1782727691862022831417
62.0675
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
34.5038
68.9034
23.0141
48.5298
42119042314151414
99.9293
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
68.3237
77.6667
60.9872
71.9758
2330670358322921410
61.5183
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
anovak-vgSNPtimap_l100_m0_e0*
81.1499
85.0168
77.6195
74.1271
1850932621836452951408
26.5911
mlin-fermikitSNPtimap_l100_m0_e0*
60.1229
46.0705
86.5103
52.4193
10030117411003015641408
90.0256
astatham-gatkINDEL*HG002compoundhet*
95.0088
94.7931
95.2256
62.9264
2840015602828214181407
99.2243
qzeng-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.5976
80.1449
79.0576
60.6684
807320001075528491405
49.3155
mlin-fermikitSNPtimap_l100_m0_e0homalt
63.6297
55.5184
74.5166
48.8430
43163458431614761404
95.1220
jpowers-varprowlINDELD16_PLUSHG002compoundhet*
17.0370
14.9082
19.8751
36.5405
349199235014111404
99.5039
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
87.2533
88.7226
85.8319
38.8447
91891168917815151403
92.6073
ciseli-customINDELD6_15*het
77.1133
84.3154
71.0447
55.4839
977318181015341381402
33.8811
gduggal-bwafbINDELI1_5**
97.8814
96.8991
98.8838
56.3942
145992467214678916571400
84.4900
gduggal-snapfbINDELI6_15HG002compoundhet*
66.9443
57.2812
80.5291
25.2164
50273749584414131393
98.5846
ckim-isaacINDELI1_5*het
97.5134
97.3900
97.6371
50.7018
7697820637702118641391
74.6245
ckim-gatkINDEL*HG002compoundhet*
93.9895
92.8338
95.1743
62.6651
2781321472769014041391
99.0741
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.3731
72.7114
89.8397
50.0523
1166843791244114071388
98.6496
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
78.1562
80.3015
76.1225
51.8771
95352339949429781387
46.5749
ciseli-customSNP*map_l125_m2_e1homalt
88.1920
86.6872
89.7500
68.5967
1519823341514817301386
80.1156
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
44.2793
38.8052
51.5516
63.0411
15462438154514521385
95.3857
cchapple-customINDEL*HG002compoundhet*
95.5576
93.9686
97.2012
57.1714
2815318075119114741382
93.7585
anovak-vgSNPtiHG002complexvarhomalt
98.2762
97.3918
99.1768
17.9619
188418504618504515361381
89.9089
ckim-vqsrINDEL*HG002compoundhet*
93.9622
92.7503
95.2061
62.6940
2778821722766513931381
99.1385
ciseli-customSNP*map_l125_m2_e0homalt
88.1697
86.6763
89.7155
68.5746
1506023151501317211379
80.1278
anovak-vgINDEL*map_siren*
72.9885
73.1309
72.8467
79.6324
54191991548920461378
67.3509
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.8238
95.1411
88.7300
60.2423
109265581092013871378
99.3511
egarrison-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
80.6539
91.2376
72.2705
67.9116
3686354391215011377
91.7388
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
69.6175
73.0888
66.4609
58.6501
28491049409220651377
66.6828
jpowers-varprowlINDELD1_5HG002complexvar*
93.8573
92.4805
95.2757
55.2360
3025524603013014941377
92.1687
ghariani-varprowlINDELD1_5HG002complexvar*
93.6809
93.5932
93.7688
56.5500
3061920963047320251375
67.9012
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200*
17.1400
15.6592
18.9300
50.8097
329177232213791373
99.5649