PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12801-12850 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | * | 62.2963 | 74.0741 | 53.7500 | 88.5057 | 20 | 7 | 43 | 37 | 29 | 78.3784 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | het | 65.2174 | 93.7500 | 50.0000 | 88.5093 | 15 | 1 | 37 | 37 | 29 | 78.3784 | |
| gduggal-snapfb | SNP | * | * | hetalt | 79.7614 | 99.7704 | 66.4373 | 62.1965 | 869 | 2 | 869 | 439 | 29 | 6.6059 | |
| gduggal-snapfb | SNP | * | map_l100_m1_e0 | homalt | 98.4097 | 97.1633 | 99.6885 | 68.9633 | 26237 | 766 | 26239 | 82 | 29 | 35.3659 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | het | 92.8266 | 92.8266 | 92.8266 | 90.7653 | 867 | 67 | 867 | 67 | 29 | 43.2836 | |
| gduggal-snapfb | SNP | ti | map_siren | homalt | 99.1394 | 98.4334 | 99.8555 | 57.8682 | 37322 | 594 | 37322 | 54 | 29 | 53.7037 | |
| gduggal-snapfb | SNP | tv | * | hetalt | 79.7614 | 99.7704 | 66.4373 | 62.1965 | 869 | 2 | 869 | 439 | 29 | 6.6059 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 41.5098 | 33.5081 | 54.5317 | 83.3700 | 1214 | 2409 | 1444 | 1204 | 29 | 2.4086 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | het | 80.4626 | 96.7526 | 68.8676 | 92.0365 | 1877 | 63 | 1867 | 844 | 29 | 3.4360 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | het | 80.5690 | 96.7430 | 69.0285 | 92.1093 | 1901 | 64 | 1890 | 848 | 29 | 3.4198 | |
| ghariani-varprowl | INDEL | * | func_cds | het | 90.6725 | 97.6636 | 84.6154 | 54.4280 | 209 | 5 | 209 | 38 | 29 | 76.3158 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | * | 85.2021 | 77.7372 | 94.2529 | 96.3701 | 1065 | 305 | 1066 | 65 | 29 | 44.6154 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 95.2328 | 73.0263 | 0 | 0 | 859 | 43 | 29 | 67.4419 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 48.1481 | 89.9415 | 0 | 0 | 91 | 98 | 29 | 29.5918 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 71.4799 | 62.8596 | 82.8402 | 34.4961 | 743 | 439 | 140 | 29 | 29 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 65.6529 | 54.9051 | 81.6327 | 49.3103 | 347 | 285 | 240 | 54 | 29 | 53.7037 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 71.1515 | 58.0150 | 91.9786 | 49.4595 | 1473 | 1066 | 344 | 30 | 29 | 96.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 94.1968 | 98.3607 | 90.3712 | 90.4265 | 780 | 13 | 779 | 83 | 29 | 34.9398 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| ghariani-varprowl | SNP | * | HG002compoundhet | het | 84.6682 | 93.2007 | 77.5669 | 61.4559 | 13214 | 964 | 13447 | 3889 | 29 | 0.7457 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | * | 92.9666 | 96.5808 | 89.6132 | 94.6918 | 2062 | 73 | 2062 | 239 | 29 | 12.1339 | |
| ghariani-varprowl | SNP | tv | segdup | homalt | 99.0657 | 99.8456 | 98.2979 | 91.0501 | 3233 | 5 | 3234 | 56 | 29 | 51.7857 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.1656 | 43.9300 | 95.4373 | 42.4088 | 778 | 993 | 753 | 36 | 29 | 80.5556 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.4286 | 19.5652 | 23.6842 | 60.8247 | 9 | 37 | 9 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | homalt | 82.6907 | 77.0227 | 89.2593 | 61.6477 | 238 | 71 | 241 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 93.9573 | 93.1904 | 94.7368 | 87.3601 | 739 | 54 | 738 | 41 | 29 | 70.7317 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 93.9532 | 93.0864 | 94.8363 | 87.4783 | 754 | 56 | 753 | 41 | 29 | 70.7317 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.5190 | 95.4545 | 58.4699 | 92.1862 | 105 | 5 | 107 | 76 | 29 | 38.1579 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | het | 90.2202 | 92.4967 | 88.0531 | 95.2498 | 1393 | 113 | 1393 | 189 | 29 | 15.3439 | |
| jpowers-varprowl | SNP | tv | segdup | homalt | 99.1421 | 99.9074 | 98.3886 | 91.4237 | 3235 | 3 | 3236 | 53 | 29 | 54.7170 | |
| jli-custom | SNP | * | map_l150_m0_e0 | * | 98.7204 | 98.1051 | 99.3435 | 75.0933 | 11804 | 228 | 11804 | 78 | 29 | 37.1795 | |
| jli-custom | SNP | * | map_l250_m1_e0 | * | 98.1678 | 97.1891 | 99.1664 | 85.6613 | 7019 | 203 | 7019 | 59 | 29 | 49.1525 | |
| jli-custom | SNP | ti | map_l150_m1_e0 | het | 98.8959 | 98.4802 | 99.3151 | 73.0550 | 12182 | 188 | 12180 | 84 | 29 | 34.5238 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.4972 | 93.5639 | 99.6204 | 24.2463 | 7574 | 521 | 7610 | 29 | 29 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4599 | 93.4908 | 99.6237 | 26.2417 | 7641 | 532 | 7678 | 29 | 29 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3988 | 100.0000 | 91.2023 | 70.8298 | 311 | 0 | 311 | 30 | 29 | 96.6667 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6217 | 99.0631 | 98.1843 | 79.0142 | 28443 | 269 | 28443 | 526 | 29 | 5.5133 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6217 | 99.0631 | 98.1843 | 79.0142 | 28443 | 269 | 28443 | 526 | 29 | 5.5133 | |
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | * | 76.5092 | 63.0487 | 97.2773 | 89.3850 | 12222 | 7163 | 12219 | 342 | 29 | 8.4795 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.7854 | 98.9446 | 92.8218 | 59.3152 | 375 | 4 | 375 | 29 | 29 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3497 | 99.9156 | 98.7902 | 51.5758 | 2368 | 2 | 2368 | 29 | 29 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3773 | 91.9938 | 99.0193 | 54.3250 | 2953 | 257 | 2928 | 29 | 29 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8475 | 97.9811 | 99.7293 | 70.4300 | 32565 | 671 | 32421 | 88 | 29 | 32.9545 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | * | 99.3135 | 98.8379 | 99.7938 | 59.0138 | 48392 | 569 | 48394 | 100 | 29 | 29.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | * | 99.3168 | 98.8481 | 99.7899 | 59.0336 | 48915 | 570 | 48917 | 103 | 29 | 28.1553 | |
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | * | 99.1092 | 98.4292 | 99.7987 | 62.1857 | 44615 | 712 | 44616 | 90 | 28 | 31.1111 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | * | 99.1232 | 98.4718 | 99.7831 | 64.7024 | 46009 | 714 | 46011 | 100 | 28 | 28.0000 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | * | 99.1279 | 98.4852 | 99.7790 | 64.7783 | 46487 | 715 | 46495 | 103 | 28 | 27.1845 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9791 | 98.2989 | 99.6689 | 57.4619 | 12308 | 213 | 12341 | 41 | 28 | 68.2927 | |