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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 251 252 253 254 255 256 257 258 259 ... 1720 1721 » 12701-12750 / 86044 show all
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2708	98.9378	99.6061	37.1789	10618	114	10620	42	29	69.0476
qzeng-custom	INDEL	*	HG002compoundhet	hetalt	86.4434	76.5369	99.2955	48.8192	19272	5908	5638	40	29	72.5000
qzeng-custom	INDEL	*	map_l150_m1_e0	het	80.8118	71.6959	92.5834	95.0292	613	242	749	60	29	48.3333
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3131	96.7575	97.8752	72.7174	1492	50	1474	32	29	90.6250
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	94.4878	95.3191	93.6709	57.5649	448	22	444	30	29	96.6667
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	72.9167	73.4266	72.4138	93.7392	105	38	105	40	29	72.5000
ltrigg-rtg2	INDEL	I1_5	*	hetalt	98.3546	97.0076	99.7395	72.4903	10860	335	11105	29	29	100.0000
qzeng-custom	SNP	*	map_l150_m0_e0	homalt	74.2731	59.5011	98.8021	79.7981	2433	1656	2392	29	29	100.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.5943	98.9387	96.2859	86.8966	4102	44	4122	159	29	18.2390
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	73.6158	59.0525	97.7135	42.8517	1608	1115	1453	34	29	85.2941
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	63.9253	47.2441	98.8157	36.3273	3360	3752	2837	34	29	85.2941
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	70.8955	66.9014	75.3968	42.7273	95	47	95	31	29	93.5484
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	44.1767	33.5366	64.7059	59.2000	55	109	66	36	29	80.5556
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	58.9524	49.6815	72.4771	51.3393	78	79	79	30	29	96.6667
ciseli-custom	INDEL	D6_15	map_l125_m2_e0	*	55.0607	53.9683	56.1983	92.1986	68	58	68	53	29	54.7170
ciseli-custom	INDEL	D6_15	map_l125_m2_e1	*	55.2000	53.9062	56.5574	92.2687	69	59	69	53	29	54.7170
ciseli-custom	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	32.7016	22.2672	61.5385	82.5000	55	192	56	35	29	82.8571
ciseli-custom	SNP	ti	func_cds	homalt	99.3195	99.8483	98.7963	20.7719	5267	8	5253	64	29	45.3125
ciseli-custom	SNP	ti	map_l150_m0_e0	het	72.0997	66.3920	78.8811	87.9805	3384	1713	3384	906	29	3.2009
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	44.0468	83.2421	29.9463	79.5867	760	153	781	1827	29	1.5873
ckim-dragen	INDEL	*	map_siren	*	97.9669	98.2321	97.7032	83.7470	7279	131	7274	171	29	16.9591
ckim-dragen	SNP	tv	*	homalt	99.9757	99.9621	99.9894	19.9141	376980	143	377083	40	29	72.5000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6289	93.8110	99.6213	24.3430	7594	501	7629	29	29	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6034	93.7599	99.6247	26.3649	7663	510	7699	29	29	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1384	90.5537	98.0186	60.1764	1668	174	1682	34	29	85.2941
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7466	96.0553	99.4986	53.1009	2362	97	6945	35	29	82.8571
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.4351	99.3209	97.5651	66.8707	1170	8	1162	29	29	100.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.2941	99.0714	99.5178	62.5456	9602	90	9699	47	29	61.7021
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3255	93.2427	99.6191	24.9186	7548	547	7585	29	29	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.3159	93.2216	99.6227	27.1443	7619	554	7658	29	29	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2668	99.4808	99.0537	68.1013	3257	17	3245	31	29	93.5484
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	86.2391	93.9189	79.7203	77.1200	139	9	114	29	29	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8861	98.5202	99.2547	76.5663	6325	95	6259	47	29	61.7021
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8861	98.5202	99.2547	76.5663	6325	95	6259	47	29	61.7021
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.2521	95.5720	98.9924	51.2038	2849	132	2849	29	29	100.0000
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
ckim-dragen	SNP	*	map_l250_m1_e0	*	97.2004	97.5768	96.8269	89.0554	7047	175	7049	231	29	12.5541
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5960	99.7232	99.4692	61.2535	55477	154	55466	296	29	9.7973
raldana-dualsentieon	SNP	ti	HG002complexvar	*	99.8917	99.7990	99.9846	17.3582	507414	1022	507354	78	29	37.1795
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.3271	94.3866	98.3491	65.6458	2085	124	2085	35	29	82.8571
rpoplin-dv42	INDEL	*	map_l100_m2_e1	*	97.9158	97.4973	98.3378	98.2252	3662	94	3668	62	29	46.7742
raldana-dualsentieon	SNP	*	HG002complexvar	homalt	99.9794	99.9695	99.9893	19.8637	288486	88	288471	31	29	93.5484
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.7595	99.8579	55.0764	25298	61	25300	36	29	80.5556
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1701	95.0166	99.4235	24.0070	5167	271	5174	30	29	96.6667
rpoplin-dv42	INDEL	I16_PLUS	HG002complexvar	*	93.7832	90.4507	97.3706	62.1815	1184	125	1185	32	29	90.6250
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
rpoplin-dv42	SNP	ti	map_l250_m1_e0	het	98.2113	98.0458	98.3773	88.2203	2910	58	2910	48	29	60.4167
rpoplin-dv42	SNP	ti	map_l250_m2_e0	het	98.3531	98.1868	98.5199	88.5673	3195	59	3195	48	29	60.4167

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