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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 243 244 245 246 247 248 249 250 251 ... 1720 1721 » 12301-12350 / 86044 show all
hfeng-pmm1	SNP	ti	map_l100_m2_e1	*	99.5757	99.3634	99.7889	64.0077	49170	315	49163	104	32	30.7692
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1492	98.5802	99.7249	57.4159	19580	282	19573	54	32	59.2593
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.8349	99.1243	94.6488	66.0998	566	5	566	32	32	100.0000
jlack-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.7961	99.7741	97.8371	63.8462	35339	80	35328	781	32	4.0973
jlack-gatk	SNP	ti	HG002complexvar	homalt	99.9491	99.9163	99.9819	18.2375	193301	162	193290	35	32	91.4286
jli-custom	INDEL	*	HG002complexvar	het	99.4410	99.0457	99.8394	56.1111	45771	441	45384	73	32	43.8356
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5170	99.7054	99.3293	39.8437	4739	14	4739	32	32	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6415	99.7240	99.5592	34.7388	7227	20	7227	32	32	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.1507	97.5083	94.8304	50.6380	587	15	587	32	31	96.8750
hfeng-pmm1	SNP	ti	HG002complexvar	*	99.8935	99.8000	99.9872	17.3497	507419	1017	507360	65	31	47.6923
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.9803	97.1761	94.8136	51.0706	585	17	585	32	31	96.8750
hfeng-pmm3	INDEL	I6_15	HG002complexvar	*	98.1740	97.0367	99.3383	57.2224	4650	142	4654	31	31	100.0000
hfeng-pmm3	SNP	*	map_l100_m1_e0	*	99.6620	99.5870	99.7371	63.4436	72104	299	72093	190	31	16.3158
hfeng-pmm3	SNP	*	map_l100_m2_e0	*	99.6651	99.5917	99.7386	65.1842	73662	302	73651	193	31	16.0622
hfeng-pmm3	SNP	*	map_l100_m2_e1	*	99.6666	99.5946	99.7387	65.1913	74434	303	74423	195	31	15.8974
hfeng-pmm3	SNP	tv	*	*	99.9443	99.9171	99.9715	21.1004	968886	804	968804	276	31	11.2319
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7099	99.7098	99.7099	59.0011	28178	82	28181	82	31	37.8049
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	96.6535	99.7967	93.7023	60.6607	491	1	491	33	31	93.9394
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2201	93.2179	99.4222	33.5409	6350	462	6367	37	31	83.7838
hfeng-pmm2	SNP	ti	HG002complexvar	homalt	99.9798	99.9757	99.9840	18.5051	193416	47	193407	31	31	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	91.6247	97.6285	86.3165	88.5095	1235	30	1249	198	31	15.6566
gduggal-bwaplat	INDEL	I1_5	HG002compoundhet	het	69.2403	61.1765	79.7527	88.3612	520	330	516	131	31	23.6641
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	77.7807	65.3066	96.1451	67.6686	2545	1352	2544	102	31	30.3922
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	69.0799	55.3552	91.8541	94.6607	1504	1213	1511	134	31	23.1343
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	87.2311	80.0232	95.8659	91.4316	5508	1375	5519	238	31	13.0252
gduggal-bwaplat	SNP	ti	map_l125_m2_e0	het	80.5577	67.8375	99.1492	88.7803	12805	6071	12819	110	31	28.1818
gduggal-bwaplat	SNP	ti	map_l125_m2_e1	het	80.7395	68.0935	99.1541	88.7617	12997	6090	13011	111	31	27.9279
eyeh-varpipe	INDEL	C6_15	HG002complexvar	homalt	0.0000	0.0000	70.3704	81.7321	0	0	95	40	31	77.5000
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	24.4790	14.1603	90.2314	68.8301	258	1564	351	38	31	81.5789
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	37.5614	34.6667	40.9836	65.1429	26	49	25	36	31	86.1111
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	42.6230	100.0000	27.0833	34.2466	13	0	13	35	31	88.5714
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	68.8100	56.9519	86.9048	56.7753	213	161	219	33	31	93.9394
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	94.3107	93.3144	95.3285	30.1733	656	47	653	32	31	96.8750
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	88.8955	90.5000	87.3469	59.7701	181	19	214	31	31	100.0000
gduggal-bwavard	INDEL	*	map_l125_m0_e0	*	88.9737	95.2381	83.4826	91.4946	840	42	839	166	31	18.6747
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.3833	95.4225	89.5317	74.6685	813	39	650	76	31	40.7895
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.3154	98.5106	96.1490	77.8952	2381	36	2272	91	31	34.0659
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.9930	98.6928	82.7027	78.7356	151	2	153	32	31	96.8750
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.7513	99.9277	97.6023	62.0856	1382	1	1384	34	31	91.1765
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.5516	99.7271	97.4035	50.4781	1462	4	1463	39	31	79.4872
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	80.4826	84.6154	76.7347	91.5952	187	34	188	57	31	54.3860
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.2011	96.5962	95.8091	80.4640	823	29	823	36	31	86.1111
ndellapenna-hhga	SNP	ti	segdup	homalt	99.7406	99.8934	99.5882	88.2312	7497	8	7497	31	31	100.0000
qzeng-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9981	84.0955	99.1351	58.5016	12965	2452	4585	40	31	77.5000
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.7018	96.2862	93.1687	88.3587	1063	41	1132	83	31	37.3494
ltrigg-rtg2	SNP	ti	segdup	homalt	99.7804	99.9734	99.5881	87.6176	7503	2	7496	31	31	100.0000
gduggal-snapfb	SNP	ti	map_l250_m0_e0	*	93.6877	92.6277	94.7722	93.6399	1269	101	1269	70	31	44.2857
gduggal-snapplat	INDEL	*	map_l100_m1_e0	het	79.4811	73.6018	86.3811	92.1058	1645	590	1795	283	31	10.9541

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