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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 239 240 241 242 243 244 245 246 247 ... 1720 1721 » 12101-12150 / 86044 show all
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	96.7744	95.3296	98.2636	65.4439	2531	124	2490	44	33	75.0000
hfeng-pmm1	INDEL	I6_15	HG002complexvar	*	98.2070	97.1411	99.2967	57.3261	4655	137	4659	33	33	100.0000
hfeng-pmm1	SNP	*	map_l125_m0_e0	*	99.1962	99.0044	99.3888	74.3664	19192	193	19189	118	33	27.9661
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.1470	91.9890	86.4754	82.1898	333	29	211	33	33	100.0000
hfeng-pmm2	SNP	*	map_siren	het	99.5406	99.5406	99.5405	57.6094	90573	418	90559	418	33	7.8947
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.2480	98.0066	94.5513	51.4774	590	12	590	34	33	97.0588
hfeng-pmm2	INDEL	I6_15	HG002compoundhet	het	79.5908	79.8077	79.3750	86.5997	166	42	127	33	33	100.0000
ciseli-custom	SNP	*	segdup	het	95.5747	98.0713	93.2020	92.0353	16983	334	16891	1232	33	2.6786
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	87.3183	98.1551	78.6365	59.0389	3937	74	3968	1078	33	3.0612
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	46.0775	80.1389	32.3344	77.7959	577	143	615	1287	33	2.5641
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	62.8906	92.3251	47.6872	81.6922	2442	203	2464	2703	33	1.2209
ciseli-custom	SNP	tv	map_l250_m0_e0	homalt	73.5751	73.5751	73.5751	93.4487	142	51	142	51	33	64.7059
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.7699	98.6301	94.9785	83.2774	864	12	662	35	33	94.2857
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6177	99.6495	99.5860	52.1198	27861	98	27903	116	33	28.4483
cchapple-custom	SNP	tv	HG002compoundhet	het	98.8352	98.5020	99.1705	51.5239	4603	70	5978	50	33	66.0000
ciseli-custom	INDEL	*	map_l250_m2_e0	het	58.1040	54.2857	62.5000	97.7123	114	96	115	69	33	47.8261
ciseli-custom	INDEL	*	map_l250_m2_e1	het	57.5214	54.0284	61.4973	97.7292	114	97	115	72	33	45.8333
ciseli-custom	INDEL	I1_5	map_l100_m1_e0	homalt	54.1379	40.1544	83.0645	82.5475	208	310	206	42	33	78.5714
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2353	99.2360	97.2546	73.3953	1169	9	1169	33	33	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.7785	99.2790	98.2829	78.8740	28505	207	28505	498	33	6.6265
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7785	99.2790	98.2829	78.8740	28505	207	28505	498	33	6.6265
ckim-gatk	SNP	ti	*	homalt	99.6240	99.2571	99.9936	16.1503	797072	5966	797063	51	33	64.7059
ckim-gatk	SNP	ti	map_l150_m2_e0	het	85.4716	76.2984	97.1519	89.8925	9828	3053	9824	288	33	11.4583
ckim-gatk	SNP	ti	map_l150_m2_e1	het	85.5750	76.4656	97.1484	89.9190	9952	3063	9948	292	33	11.3014
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892
ckim-dragen	SNP	*	map_l100_m2_e1	homalt	99.6376	99.4100	99.8663	58.3837	27632	164	27637	37	33	89.1892
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8242	94.2928	99.4953	23.7079	6493	393	6506	33	33	100.0000
ckim-gatk	INDEL	D6_15	HG002compoundhet	hetalt	96.9335	94.4301	99.5733	24.1244	7697	454	7701	33	33	100.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4894	99.5224	99.4565	52.2754	6043	29	6039	33	33	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	95.2014	93.3840	97.0909	41.7126	1228	87	1335	40	33	82.5000
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	70.9804	63.9576	79.7357	72.0099	181	102	181	46	33	71.7391
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.1761	99.4340	93.1248	68.3364	6149	35	6163	455	33	7.2528
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	97.1636	99.0725	95.3268	47.5871	3418	32	3427	168	33	19.6429
gduggal-snapplat	INDEL	D1_5	map_l100_m2_e0	*	85.5517	80.3655	91.4534	91.1012	1539	376	1787	167	33	19.7605
gduggal-snapplat	INDEL	D1_5	map_l100_m2_e1	*	85.3151	80.0413	91.3330	91.1809	1552	387	1802	171	33	19.2982
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	51.6425	35.4076	95.3714	40.1032	899	1640	886	43	33	76.7442
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.9406	86.2302	91.8269	26.6314	382	61	382	34	33	97.0588
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	82.7682	83.3333	82.2107	69.9221	470	94	476	103	33	32.0388
gduggal-snapvard	SNP	ti	map_l100_m2_e0	homalt	97.9436	96.1822	99.7707	62.4459	17610	699	17408	40	33	82.5000
gduggal-snapvard	SNP	ti	map_l100_m2_e1	homalt	97.9449	96.1825	99.7730	62.4406	17788	706	17584	40	33	82.5000
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	85.7525	99.1025	75.5722	63.2591	3975	36	4028	1302	33	2.5346
gduggal-snapvard	SNP	tv	segdup	*	97.9096	97.0933	98.7396	94.2289	8284	248	8226	105	33	31.4286
ghariani-varprowl	INDEL	D16_PLUS	HG002complexvar	homalt	80.0982	75.0865	85.8268	71.4927	217	72	218	36	33	91.6667
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	45.4362	49.0690	42.3041	95.5909	448	465	459	626	33	5.2716
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.4077	95.0956	99.8350	48.2245	10742	554	19971	33	33	100.0000
gduggal-snapvard	INDEL	D1_5	func_cds	*	87.5742	91.8239	83.7004	42.8212	146	13	190	37	33	89.1892
gduggal-snapvard	INDEL	D1_5	func_cds	het	87.2852	100.0000	77.4390	47.4359	85	0	127	37	33	89.1892
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	96.7243	96.3506	97.1009	69.6907	2561	97	2579	77	32	41.5584
ghariani-varprowl	INDEL	I6_15	segdup	*	72.0984	66.8571	78.2313	93.2039	117	58	115	32	32	100.0000

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