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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 237 238 239 240 241 242 243 244 245 ... 1720 1721 » 12001-12050 / 86044 show all
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.5751	94.4731	98.7728	51.8310	3299	193	3300	41	34	82.9268
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.9367	98.4377	99.4408	75.9589	44988	714	44988	253	34	13.4387
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9367	98.4377	99.4408	75.9589	44988	714	44988	253	34	13.4387
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2368	99.3209	97.1761	73.3746	1170	8	1170	34	34	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	*	99.2854	99.2467	99.3242	70.6721	21607	164	21604	147	34	23.1293
dgrover-gatk	SNP	ti	map_l125_m2_e0	het	99.2165	99.3060	99.1273	77.0589	18745	131	18741	165	34	20.6061
dgrover-gatk	SNP	ti	map_l125_m2_e1	het	99.2226	99.3137	99.1317	77.0880	18956	131	18952	166	34	20.4819
dgrover-gatk	SNP	ti	map_l125_m1_e0	het	99.2150	99.2992	99.1308	75.9575	18138	128	18134	159	33	20.7547
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	93.8354	92.2330	95.4944	66.5970	760	64	763	36	33	91.6667
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	63.3593	46.6406	98.7609	37.5052	3346	3828	2949	37	33	89.1892
egarrison-hhga	SNP	*	map_l100_m0_e0	*	99.3454	98.8977	99.7972	67.0353	32479	362	32480	66	33	50.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.4855	98.1673	98.8057	79.9095	6535	122	6536	79	33	41.7722
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8165	94.2782	99.4953	23.7106	6492	394	6505	33	33	100.0000
ckim-vqsr	INDEL	D6_15	HG002compoundhet	hetalt	96.9271	94.4179	99.5733	24.1268	7696	455	7700	33	33	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4972	95.5852	99.4871	26.0156	6582	304	6595	34	33	97.0588
dgrover-gatk	INDEL	D6_15	HG002compoundhet	hetalt	97.2251	94.9945	99.5630	24.6392	7743	408	7747	34	33	97.0588
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.7961	88.8038	99.3832	46.4455	7424	936	7412	46	33	71.7391
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.7961	88.8038	99.3832	46.4455	7424	936	7412	46	33	71.7391
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	92.2039	88.9215	95.7380	70.2861	1212	151	1213	54	33	61.1111
gduggal-bwafb	SNP	*	map_l250_m1_e0	het	97.0310	96.9085	97.1537	89.8249	4608	147	4608	135	33	24.4444
gduggal-bwafb	SNP	*	map_l250_m2_e0	het	97.2051	97.0928	97.3176	90.2537	5043	151	5043	139	33	23.7410
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.4563	82.1519	98.1864	56.4502	1947	423	1949	36	33	91.6667
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	83.3739	71.9097	99.1866	76.8457	4270	1668	4268	35	33	94.2857
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	86.9639	78.4943	97.4823	82.5580	2471	677	2478	64	33	51.5625
gduggal-bwaplat	SNP	ti	map_l125_m1_e0	*	75.1104	60.3648	99.3885	86.1772	17708	11627	17715	109	33	30.2752
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.7005	42.6942	99.2246	54.0503	4903	6581	4863	38	33	86.8421
eyeh-varpipe	INDEL	C6_15	*	homalt	0.0000	0.0000	64.6259	92.9598	0	0	95	52	33	63.4615
eyeh-varpipe	INDEL	D16_PLUS	*	hetalt	28.3581	16.7098	93.6210	67.5396	323	1610	499	34	33	97.0588
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	28.2195	16.6235	93.3071	68.0905	321	1610	474	34	33	97.0588
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	28.2195	16.6235	93.3071	68.0905	321	1610	474	34	33	97.0588
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	79.2133	76.5550	82.0628	67.6812	160	49	183	40	33	82.5000
eyeh-varpipe	INDEL	D6_15	map_l100_m2_e0	homalt	74.5239	83.0769	67.5676	84.9389	54	11	75	36	33	91.6667
eyeh-varpipe	INDEL	I6_15	HG002complexvar	hetalt	50.4268	34.5053	93.6293	59.7826	422	801	485	33	33	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	85.0307	86.8852	83.2536	52.9279	106	16	174	35	33	94.2857
gduggal-bwafb	SNP	tv	HG002compoundhet	homalt	99.1913	99.5573	98.8280	47.3709	3373	15	3373	40	33	82.5000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	86.8775	97.0427	78.6399	89.4490	886	27	902	245	33	13.4694
gduggal-bwafb	SNP	tv	map_l150_m1_e0	het	97.9431	98.3732	97.5168	78.3908	6833	113	6833	174	33	18.9655
gduggal-bwafb	SNP	tv	map_l150_m2_e0	het	97.9956	98.4280	97.5670	79.8007	7138	114	7138	178	33	18.5393
gduggal-bwafb	SNP	tv	map_l150_m2_e1	het	98.0150	98.4486	97.5853	79.8450	7234	114	7234	179	33	18.4358
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	71.9701	57.8195	95.2912	87.3887	769	561	769	38	33	86.8421
eyeh-varpipe	INDEL	I6_15	map_siren	*	77.9593	69.5082	88.7500	73.3555	212	93	284	36	33	91.6667
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	96.5155	99.7628	93.4730	54.4025	6728	16	6559	458	33	7.2052
gduggal-bwafb	INDEL	D16_PLUS	HG002complexvar	het	83.6409	73.8031	96.5049	50.3136	817	290	994	36	33	91.6667
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	53.4225	56.2232	50.8876	80.9255	131	102	86	83	33	39.7590
qzeng-custom	SNP	tv	map_l100_m0_e0	homalt	83.9304	72.9329	98.8335	64.8615	2805	1041	2796	33	33	100.0000
qzeng-custom	SNP	tv	map_l150_m1_e0	homalt	81.4702	69.3107	98.8039	71.2754	2735	1211	2726	33	33	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.8001	98.8271	98.7732	47.1774	3623	43	3623	45	33	73.3333
mlin-fermikit	INDEL	D6_15	map_l100_m1_e0	*	74.6205	69.3798	80.7175	81.6461	179	79	180	43	33	76.7442
mlin-fermikit	INDEL	D6_15	map_l100_m2_e0	*	75.2386	70.0758	81.2227	82.7430	185	79	186	43	33	76.7442
mlin-fermikit	INDEL	D6_15	map_siren	het	83.2384	82.1429	84.3636	79.3233	230	50	232	43	33	76.7442

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