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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
1151-1200 / 86044 show all
ghariani-varprowlSNP*HG002complexvar*
99.3539
99.7064
99.0038
22.0629
752159221575254975721579
20.8531
gduggal-snapvardSNPtv**
98.9298
98.8902
98.9694
27.3396
9589361076295395999341577
15.8748
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
58.8795
58.5755
59.1866
73.4509
49183478691347671577
33.0816
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
77.1879
70.9467
84.6330
51.0225
97804005995218071577
87.2717
ndellapenna-hhgaINDELD6_15*het
92.4134
97.5414
87.7976
56.6240
113072851205916761576
94.0334
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7763
96.4226
95.1386
69.4450
3204711893201716361576
96.3325
ghariani-varprowlINDELI16_PLUS**
60.9624
54.8063
68.6764
63.4694
34952882349715951576
98.8088
gduggal-snapplatSNPti*het
98.9857
98.8246
99.1474
28.1840
1266829150681267456108991576
14.4600
asubramanian-gatkINDEL*HG002compoundhet*
93.4362
93.2377
93.6356
65.8907
2793420262783618921575
83.2452
ckim-dragenINDEL*HG002compoundhethomalt
46.1333
99.2711
30.0488
84.8211
681567715761573
99.8096
gduggal-snapvardINDEL**homalt
86.7363
77.5779
98.3465
41.7135
97105280669962416751571
93.7910
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
77.1234
70.6347
84.9247
50.6689
97374048986417511570
89.6630
gduggal-snapfbINDELD1_5HG002compoundhet*
80.1461
78.4226
81.9472
64.9485
959526401045423031568
68.0851
gduggal-snapfbSNP**het
98.9809
99.8048
98.1706
24.8638
186994336581870819348631567
4.4947
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.5338
92.8273
90.2759
58.4295
2623320272618028201567
55.5674
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
71.6772
70.5040
72.8901
52.2851
42811791480217861566
87.6820
jpowers-varprowlINDELI16_PLUS**
56.3839
48.9258
66.5246
59.4066
31203257312215711564
99.5544
qzeng-customINDEL**homalt
98.3570
98.7793
97.9383
51.6092
123644152812365526031560
59.9308
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
59.6364
59.0060
60.2804
68.5856
43573027614840511556
38.4103
gduggal-bwavardSNPtiHG002compoundhet*
84.8363
81.4967
88.4613
41.1291
1424432341429818651554
83.3244
ckim-gatkINDEL***
99.2271
99.1551
99.2992
60.7185
341631291134149224101553
64.4398
astatham-gatkINDEL***
99.3424
99.2404
99.4446
59.9126
341925261734178819091550
81.1943
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.7872
35.8879
42.1961
62.4776
11522058114915741547
98.2846
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
48.6441
89.1553
33.4464
63.7189
7819578915701544
98.3439
ndellapenna-hhgaINDELD6_15HG002compoundhethet
61.6175
85.1636
48.2714
46.2388
729127148015861544
97.3518
gduggal-bwavardSNPtiHG002compoundhethet
83.9896
84.9027
83.0960
44.5406
80701435910418521542
83.2613
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
65.6393
56.0506
79.1857
70.3212
87316846848022291542
69.1790
jlack-gatkINDEL**homalt
99.2685
99.7907
98.7518
57.7386
12491026212492315791542
97.6567
gduggal-bwavardSNPtv**
99.2324
99.0032
99.4627
26.1679
960032966695530951611540
29.8392
egarrison-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.4994
78.7352
82.3445
83.8017
79312142803617231538
89.2629
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.6222
79.0628
82.2442
83.6336
79642109814317581536
87.3720
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
53.6696
72.8723
42.4765
23.3535
13751113215331532
99.9348
ckim-vqsrINDEL***
99.2541
99.0614
99.4476
60.7768
341308323434116718951532
80.8443
qzeng-customSNP***
99.4966
99.2413
99.7533
22.5407
303145823176301298374521530
20.5314
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50*
73.0180
70.7114
75.4801
45.1896
47611972475615451527
98.8350
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.5315
93.3228
87.9023
49.1930
136419761270117481525
87.2426
ciseli-customSNP*map_l125_m2_e1*
81.1911
76.9289
85.9532
77.6472
36312108903623759221525
25.7514
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50*
74.6805
73.6967
75.6909
58.8837
49621771495715921522
95.6030
gduggal-bwavardSNPtiHG002complexvarhet
98.2415
97.2329
99.2714
18.7202
306056871030205022171521
68.6062
ciseli-customSNP*map_l125_m2_e0*
81.1188
76.8380
85.9047
77.6345
35901108223583058791516
25.7867
gduggal-snapplatSNP*HG002complexvarhet
97.4346
97.1046
97.7668
23.9217
45202213478453020103481516
14.6502
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
33.8478
32.4294
35.3960
74.1660
861179485815661515
96.7433
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658
eyeh-varpipeINDELI1_5*het
97.6534
97.4342
97.8735
52.4121
7701320287690916711507
90.1855
mlin-fermikitINDELD6_15HG002compoundhethet
44.7280
80.2570
31.0032
43.1484
68716968315201507
99.1447
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
85.1837
88.4652
82.1369
53.6130
7401965740316101503
93.3540
ciseli-customINDELD16_PLUS**
59.6718
52.7860
68.6237
57.6195
35813203356516301503
92.2086
raldana-dualsentieonINDEL*HG002compoundhet*
92.3506
90.1368
94.6759
61.0439
2700529552688715121502
99.3386