PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11651-11700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | * | 96.5938 | 96.2264 | 96.9641 | 66.5839 | 1581 | 62 | 1565 | 49 | 36 | 73.4694 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.6297 | 90.2717 | 99.4297 | 29.8103 | 7275 | 784 | 7323 | 42 | 36 | 85.7143 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.6297 | 90.2717 | 99.4297 | 29.8103 | 7275 | 784 | 7323 | 42 | 36 | 85.7143 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.6255 | 94.6746 | 64.3564 | 81.0507 | 160 | 9 | 65 | 36 | 36 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 68.8650 | 53.4107 | 96.9038 | 66.6154 | 1472 | 1284 | 1471 | 47 | 36 | 76.5957 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | * | 72.1141 | 56.5817 | 99.4011 | 87.0646 | 18582 | 14259 | 18588 | 112 | 36 | 32.1429 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 87.1597 | 96.2729 | 79.6226 | 85.7802 | 1369 | 53 | 1055 | 270 | 36 | 13.3333 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | * | 98.4686 | 98.1555 | 98.7838 | 81.2749 | 7716 | 145 | 7716 | 95 | 36 | 37.8947 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.4105 | 51.3337 | 98.1491 | 56.8902 | 1963 | 1861 | 1962 | 37 | 36 | 97.2973 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.6918 | 90.6694 | 88.7352 | 58.9619 | 447 | 46 | 449 | 57 | 36 | 63.1579 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.7777 | 98.5185 | 82.4615 | 65.1288 | 266 | 4 | 268 | 57 | 36 | 63.1579 | |
| gduggal-bwafb | INDEL | D1_5 | * | hetalt | 93.2065 | 88.0527 | 99.0011 | 79.2540 | 9021 | 1224 | 3568 | 36 | 36 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.9148 | 73.4651 | 97.8302 | 47.7704 | 706 | 255 | 2074 | 46 | 36 | 78.2609 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.7440 | 88.1997 | 97.7819 | 39.9778 | 3356 | 449 | 1587 | 36 | 36 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.6525 | 87.0027 | 94.6221 | 51.2057 | 984 | 147 | 651 | 37 | 36 | 97.2973 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9837 | 93.8013 | 94.1667 | 85.5706 | 1256 | 83 | 1243 | 77 | 36 | 46.7532 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | het | 94.4176 | 97.9823 | 91.1032 | 89.6399 | 777 | 16 | 768 | 75 | 36 | 48.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | het | 94.4634 | 97.9012 | 91.2587 | 89.7122 | 793 | 17 | 783 | 75 | 36 | 48.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 64.7519 | 58.7097 | 72.1805 | 82.7048 | 91 | 64 | 96 | 37 | 36 | 97.2973 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.1459 | 90.3226 | 61.4583 | 85.1163 | 56 | 6 | 59 | 37 | 36 | 97.2973 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 75.4927 | 64.2630 | 91.4781 | 75.0188 | 1212 | 674 | 1213 | 113 | 36 | 31.8584 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 85.1064 | 100.0000 | 74.0741 | 95.3356 | 1 | 0 | 140 | 49 | 36 | 73.4694 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | * | 97.0663 | 96.7102 | 97.4251 | 83.8811 | 1852 | 63 | 2308 | 61 | 36 | 59.0164 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | * | 76.3001 | 73.2984 | 79.5580 | 91.7314 | 140 | 51 | 144 | 37 | 36 | 97.2973 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 14.5031 | 86.9565 | 7.9113 | 76.9878 | 240 | 36 | 264 | 3073 | 36 | 1.1715 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.5197 | 98.8415 | 83.4904 | 85.3580 | 2389 | 28 | 2392 | 473 | 36 | 7.6110 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.8911 | 87.3497 | 99.1833 | 60.3693 | 22151 | 3208 | 22225 | 183 | 36 | 19.6721 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 31.6644 | 21.5926 | 59.3458 | 76.4835 | 141 | 512 | 127 | 87 | 36 | 41.3793 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 84.5678 | 88.4131 | 81.0431 | 88.8392 | 4212 | 552 | 4211 | 985 | 36 | 3.6548 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 48.7545 | 54.7591 | 43.9366 | 94.6836 | 466 | 385 | 471 | 601 | 36 | 5.9900 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 57.4446 | 41.4634 | 93.4708 | 72.4562 | 561 | 792 | 544 | 38 | 36 | 94.7368 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 43.6441 | 89.1892 | 0 | 0 | 103 | 133 | 36 | 27.0677 | |
| ghariani-varprowl | SNP | ti | segdup | homalt | 99.5818 | 99.9334 | 99.2326 | 88.7647 | 7500 | 5 | 7500 | 58 | 36 | 62.0690 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | * | 57.3585 | 57.5758 | 57.1429 | 81.9063 | 19 | 14 | 64 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5015 | 94.1176 | 53.8462 | 81.9757 | 16 | 1 | 56 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.4953 | 98.4031 | 98.5877 | 57.4464 | 10907 | 177 | 10820 | 155 | 36 | 23.2258 | |
| jli-custom | SNP | * | HG002compoundhet | * | 99.7328 | 99.7599 | 99.7058 | 41.1267 | 25760 | 62 | 25757 | 76 | 36 | 47.3684 | |
| jli-custom | SNP | ti | map_l150_m2_e0 | * | 99.2101 | 98.8933 | 99.5289 | 73.1343 | 20285 | 227 | 20283 | 96 | 36 | 37.5000 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | * | 99.2158 | 98.9046 | 99.5289 | 73.2251 | 20496 | 227 | 20494 | 97 | 36 | 37.1134 | |
| jli-custom | SNP | tv | map_siren | * | 99.6133 | 99.5493 | 99.6773 | 55.0835 | 45723 | 207 | 45718 | 148 | 36 | 24.3243 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7386 | 93.9847 | 99.6588 | 27.1170 | 10437 | 668 | 10516 | 36 | 36 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | * | 96.8429 | 94.6197 | 99.1732 | 57.6142 | 6419 | 365 | 6357 | 53 | 36 | 67.9245 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.9234 | 93.0786 | 98.9476 | 63.4393 | 4653 | 346 | 4607 | 49 | 36 | 73.4694 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.9234 | 93.0786 | 98.9476 | 63.4393 | 4653 | 346 | 4607 | 49 | 36 | 73.4694 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | * | 63.1970 | 59.4406 | 67.4603 | 94.5431 | 85 | 58 | 85 | 41 | 36 | 87.8049 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | het | 72.9591 | 87.1795 | 62.7273 | 93.3775 | 68 | 10 | 69 | 41 | 36 | 87.8049 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | * | 99.3061 | 98.8274 | 99.7894 | 56.8168 | 71554 | 849 | 71550 | 151 | 36 | 23.8411 | |
| ltrigg-rtg1 | SNP | tv | HG002complexvar | het | 99.7971 | 99.6716 | 99.9230 | 21.1569 | 150239 | 495 | 150457 | 116 | 36 | 31.0345 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.9863 | 79.9619 | 97.8009 | 49.2660 | 1680 | 421 | 1690 | 38 | 36 | 94.7368 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4782 | 93.6096 | 99.5281 | 29.2918 | 7544 | 515 | 7592 | 36 | 36 | 100.0000 | |