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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 219 220 221 222 223 224 225 226 227 ... 1720 1721 » 11101-11150 / 86044 show all
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	87.0859	79.3103	96.5517	52.0850	483	126	1176	42	40	95.2381
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	88.3609	86.1027	90.7407	70.8221	570	92	686	70	40	57.1429
gduggal-bwavard	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	68.0394	66.6667	69.4698	94.6639	2	1	380	167	40	23.9521
gduggal-bwavard	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	64.3489	66.6667	62.1868	95.0669	2	1	273	166	40	24.0964
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	79.7506	68.0178	96.3749	45.6511	2601	1223	1090	41	40	97.5610
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5570	99.4777	99.6364	55.6678	11237	59	11234	41	40	97.5610
gduggal-bwavard	INDEL	I6_15	segdup	*	68.6994	65.1429	72.6667	92.8605	114	61	109	41	40	97.5610
gduggal-bwavard	INDEL	I6_15	segdup	het	78.4212	97.5904	65.5462	93.4795	81	2	78	41	40	97.5610
gduggal-bwavard	SNP	*	map_siren	homalt	98.4056	96.9468	99.9088	52.1457	53472	1684	52608	48	40	83.3333
gduggal-snapfb	INDEL	*	map_l100_m2_e1	*	93.3057	90.9478	95.7892	85.0002	3416	340	3435	151	40	26.4901
ckim-dragen	INDEL	D1_5	HG002compoundhet	hetalt	96.7587	94.0877	99.5857	56.9377	9612	604	9615	40	40	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4901	93.6175	99.5447	31.6449	8698	593	8745	40	40	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4901	93.6175	99.5447	31.6449	8698	593	8745	40	40	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9137	96.7068	99.1511	64.1489	5139	175	5139	44	40	90.9091
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.6551	99.1981	98.1180	73.7453	19422	157	19551	375	40	10.6667
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.6551	99.1981	98.1180	73.7453	19422	157	19551	375	40	10.6667
ciseli-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	69.5898	94.9602	54.9176	73.3767	2864	152	2898	2379	40	1.6814
ciseli-custom	SNP	ti	map_l125_m0_e0	het	74.4671	68.2803	81.8868	84.0446	5642	2621	5642	1248	40	3.2051
ciseli-custom	SNP	tv	map_l250_m0_e0	*	63.1004	58.1699	68.9441	95.6122	445	320	444	200	40	20.0000
ckim-gatk	SNP	*	map_l150_m1_e0	het	84.3543	74.8499	96.6237	89.7210	14458	4858	14452	505	40	7.9208
ckim-gatk	SNP	ti	map_l125_m1_e0	het	88.7011	81.4464	97.3746	85.8996	14877	3389	14873	401	40	9.9751
ciseli-custom	INDEL	D1_5	map_l100_m2_e1	het	79.5099	74.9211	84.6975	89.9093	950	318	952	172	40	23.2558
ciseli-custom	INDEL	D1_5	map_l150_m2_e0	homalt	78.2427	77.2727	79.2373	89.5806	187	55	187	49	40	81.6327
ciseli-custom	INDEL	D1_5	map_l150_m2_e1	homalt	78.5276	77.4194	79.6680	89.5354	192	56	192	49	40	81.6327
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	86.7340	86.1272	87.3494	72.8980	298	48	290	42	40	95.2381
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	46.1817	33.6158	73.7500	67.0103	119	235	118	42	40	95.2381
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1864	99.4416	98.9325	66.4187	3740	21	3707	40	40	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1864	99.4416	98.9325	66.4187	3740	21	3707	40	40	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.7584	99.2747	98.2475	76.8599	19437	142	19509	348	40	11.4943
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7584	99.2747	98.2475	76.8599	19437	142	19509	348	40	11.4943
cchapple-custom	SNP	ti	map_l250_m2_e0	het	95.5856	95.7898	95.3823	91.6456	3117	137	3119	151	40	26.4901
ciseli-custom	INDEL	*	map_l250_m1_e0	*	57.5139	51.1475	65.6904	97.4137	156	149	157	82	40	48.7805
ciseli-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	0.0000	0.0000	23.6842	94.8614	0	0	36	116	40	34.4828
cchapple-custom	INDEL	*	map_l100_m2_e0	het	95.1944	96.5756	93.8521	85.6721	2228	79	2412	158	40	25.3165
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6120	99.6463	99.5777	54.2814	10142	36	10139	43	40	93.0233
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	83.1109	76.3884	91.1308	38.7228	4154	1284	411	40	40	100.0000
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	89.2479	85.0979	93.8235	76.4116	5739	1005	5742	378	40	10.5820
gduggal-snapvard	INDEL	*	map_siren	homalt	89.9289	83.0132	98.1015	71.6674	2204	451	2377	46	40	86.9565
gduggal-snapvard	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	0.0000	0.0000	36.3924	88.4798	0	0	115	201	40	19.9005
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	46.0317	89.0815	0	0	87	102	40	39.2157
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	40.1132	30.9859	56.8627	26.6187	44	98	58	44	40	90.9091
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	48.0929	41.6667	56.8627	26.6187	10	14	58	44	40	90.9091
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	0.0000	0.0000	27.3743	59.8655	0	168	49	130	40	30.7692
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	32.7668	34.5725	31.1404	85.7143	93	176	71	157	40	25.4777
gduggal-snapvard	INDEL	I1_5	map_l150_m1_e0	*	89.6858	94.8617	85.0455	90.4043	480	26	654	115	40	34.7826
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	60.9231	51.0140	75.6098	42.2535	327	314	124	40	40	100.0000
ghariani-varprowl	SNP	tv	map_l100_m2_e1	homalt	99.1004	98.8820	99.3197	66.7481	9198	104	9198	63	40	63.4921
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	94.1563	97.8654	90.7180	83.3187	596	13	518	53	40	75.4717
jlack-gatk	INDEL	D1_5	HG002compoundhet	hetalt	95.0540	90.9554	99.5394	57.6003	9292	924	9293	43	40	93.0233
jlack-gatk	INDEL	D6_15	HG002complexvar	het	98.1096	98.1090	98.1101	59.2917	3061	59	3011	58	40	68.9655

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