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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 214 215 216 217 218 219 220 221 222 ... 1720 1721 » 10851-10900 / 86044 show all
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	88.3102	87.5375	89.0966	84.7216	583	83	572	70	42	60.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	88.3102	87.5375	89.0966	84.7216	583	83	572	70	42	60.0000
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	95.0350	97.4018	92.7804	51.2443	1612	43	2763	215	42	19.5349
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	91.4127	92.9323	89.9420	85.4816	618	47	465	52	42	80.7692
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.9873	91.5781	96.5267	61.0569	1207	111	1195	43	42	97.6744
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	74.0454	79.7297	69.1176	73.4893	118	30	94	42	42	100.0000
hfeng-pmm2	SNP	*	*	het	99.9111	99.8854	99.9369	19.2150	1871439	2148	1871315	1181	42	3.5563
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7060	96.2006	99.2594	58.4607	8077	319	8041	60	42	70.0000
hfeng-pmm1	INDEL	D6_15	*	homalt	99.4474	99.5732	99.3220	50.6075	6299	27	6299	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	HG002compoundhet	homalt	53.3333	100.0000	36.3636	67.8049	24	0	24	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9167	99.3224	98.5143	47.0103	2785	19	2785	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0239	99.3681	98.6821	49.3000	3145	20	3145	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
jlack-gatk	INDEL	D1_5	HG002complexvar	hetalt	93.7719	91.1243	96.5779	72.4607	1232	120	1270	45	42	93.3333
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.8359	92.4591	99.4688	63.5748	8595	701	8613	46	42	91.3043
hfeng-pmm2	SNP	tv	*	*	99.9268	99.9066	99.9471	21.6564	968784	906	968705	513	42	8.1871
hfeng-pmm3	INDEL	*	HG002complexvar	het	98.8973	97.9724	99.8399	56.4422	45275	937	44901	72	42	58.3333
hfeng-pmm3	INDEL	D1_5	HG002compoundhet	het	87.8989	80.4977	96.7989	73.8775	1391	337	1391	46	42	91.3043
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8197	99.8356	99.8037	72.1124	21863	36	21863	43	42	97.6744
jlack-gatk	SNP	ti	map_l250_m2_e1	het	92.2399	98.3631	86.8344	94.0808	3245	54	3245	492	42	8.5366
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.7497	95.9658	99.6012	27.0945	10657	448	10739	43	42	97.6744
hfeng-pmm1	SNP	ti	map_siren	*	99.7016	99.5376	99.8660	52.2018	99891	464	99878	134	42	31.3433
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2974	99.4333	99.1620	40.9075	5088	29	5088	43	42	97.6744
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3494	99.4543	99.2447	49.9340	5650	31	5650	43	42	97.6744
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.1699	81.7568	69.5652	72.8346	121	27	96	42	42	100.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	72.9905	59.8984	93.4066	85.0088	3655	2447	3655	258	42	16.2791
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	95.0505	97.9987	92.2745	68.7494	3085	63	2783	233	42	18.0258
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	95.9795	96.8235	95.1501	49.1486	823	27	824	42	42	100.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.0823	99.0065	97.1751	54.0902	6677	67	6708	195	42	21.5385
gduggal-bwavard	SNP	*	map_l250_m1_e0	*	90.1392	97.5353	83.7857	91.6472	7044	178	6976	1350	42	3.1111
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.4259	97.9953	96.8630	51.4454	4595	94	4539	147	42	28.5714
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	74.5401	60.5690	96.8890	74.8497	6728	4380	6727	216	42	19.4444
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	35.3662	31.0680	41.0448	83.2080	64	142	55	79	42	53.1646
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	64.2663	78.7037	54.3046	76.0317	85	23	82	69	42	60.8696
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	64.7059	58.5106	72.3684	53.7994	110	78	110	42	42	100.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	40.0000	40.0000	40.0000	55.8824	30	45	42	63	42	66.6667
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	54.6746	84.6154	40.3846	55.1724	11	2	42	62	42	67.7419
gduggal-snapvard	INDEL	I1_5	map_l150_m2_e0	het	87.3970	98.7055	78.4133	92.5365	305	4	425	117	42	35.8974
gduggal-snapfb	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	57.6740	98.5178	40.7711	77.3433	1994	30	2041	2965	42	1.4165
gduggal-snapplat	INDEL	D1_5	map_siren	het	85.7607	82.4769	89.3168	89.6940	1878	399	2157	258	42	16.2791
gduggal-snapplat	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	42.0587	30.6709	66.8966	62.3377	96	217	97	48	42	87.5000
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	97.9537	99.3610	96.5858	46.1375	7308	47	7327	259	42	16.2162
gduggal-snapvard	INDEL	*	map_l250_m1_e0	het	72.3286	94.2105	58.6957	95.8488	179	11	270	190	42	22.1053
ltrigg-rtg1	SNP	tv	*	homalt	99.9663	99.9491	99.9836	19.8090	376929	192	376963	62	42	67.7419
jli-custom	SNP	ti	*	homalt	99.9866	99.9797	99.9934	15.9268	802875	163	802870	53	42	79.2453
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.6596	99.0406	96.3166	82.8425	1342	13	1229	47	42	89.3617
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.8278	100.0000	97.6827	39.6904	2738	0	2740	65	42	64.6154
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	74.4444	94.3662	61.4679	54.5833	67	4	67	42	42	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.5651	93.9933	99.2815	52.4049	6494	415	6494	47	42	89.3617

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