PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10651-10700 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | * | het | 99.8548 | 99.7659 | 99.9438 | 20.8578 | 590311 | 1385 | 590332 | 332 | 44 | 13.2530 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.0256 | 95.9130 | 0 | 0 | 103 | 53 | 44 | 83.0189 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.2516 | 98.6776 | 88.3913 | 75.0612 | 4701 | 63 | 4500 | 591 | 44 | 7.4450 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.8753 | 95.0578 | 85.2286 | 76.3056 | 904 | 47 | 727 | 126 | 44 | 34.9206 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | het | 92.5346 | 98.5876 | 87.1819 | 61.1401 | 4607 | 66 | 1884 | 277 | 44 | 15.8845 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | * | 90.6036 | 97.5016 | 84.6171 | 92.0596 | 7688 | 197 | 7613 | 1384 | 44 | 3.1792 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | het | 90.2624 | 97.3906 | 84.1064 | 88.1487 | 4964 | 133 | 4932 | 932 | 44 | 4.7210 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | het | 91.4999 | 98.3732 | 85.5243 | 84.8383 | 6833 | 113 | 6818 | 1154 | 44 | 3.8128 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | het | 98.2879 | 98.3057 | 98.2700 | 78.1213 | 8123 | 140 | 8123 | 143 | 44 | 30.7692 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | het | 98.1591 | 98.7359 | 97.5891 | 74.7511 | 9998 | 128 | 9998 | 247 | 44 | 17.8138 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.6239 | 79.2796 | 97.9313 | 58.0115 | 2223 | 581 | 2225 | 47 | 44 | 93.6170 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | het | 79.9285 | 66.9418 | 99.1669 | 89.4354 | 19626 | 9692 | 19640 | 165 | 44 | 26.6667 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | het | 80.1160 | 67.2065 | 99.1643 | 89.4169 | 19920 | 9720 | 19934 | 168 | 44 | 26.1905 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | het | 88.6308 | 98.5965 | 80.4948 | 92.7959 | 843 | 12 | 846 | 205 | 44 | 21.4634 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | het | 88.9752 | 98.5651 | 81.0860 | 93.2486 | 893 | 13 | 896 | 209 | 44 | 21.0526 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 46.8531 | 84.4057 | 0 | 0 | 134 | 152 | 44 | 28.9474 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | het | 98.1510 | 96.8794 | 99.4564 | 54.4051 | 20117 | 648 | 20856 | 114 | 44 | 38.5965 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | * | 65.8380 | 50.7257 | 93.7759 | 46.3252 | 664 | 645 | 678 | 45 | 44 | 97.7778 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 78.6619 | 71.5415 | 87.3563 | 60.2740 | 1267 | 504 | 304 | 44 | 44 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3772 | 92.4257 | 96.4128 | 70.4962 | 3734 | 306 | 3709 | 138 | 44 | 31.8841 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.1719 | 93.0119 | 99.5542 | 28.6148 | 9743 | 732 | 9825 | 44 | 44 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3229 | 98.3425 | 83.5125 | 84.0206 | 356 | 6 | 233 | 46 | 44 | 95.6522 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0481 | 94.6421 | 99.5798 | 42.9211 | 10510 | 595 | 10663 | 45 | 44 | 97.7778 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3219 | 95.4262 | 99.2945 | 64.0832 | 17004 | 815 | 17030 | 121 | 44 | 36.3636 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | hetalt | 96.9361 | 94.4597 | 99.5459 | 61.8378 | 9650 | 566 | 9645 | 44 | 44 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5713 | 92.7921 | 96.4200 | 59.1883 | 1223 | 95 | 1212 | 45 | 44 | 97.7778 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6216 | 99.8758 | 99.3687 | 35.8426 | 7238 | 9 | 7241 | 46 | 44 | 95.6522 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6237 | 98.6866 | 98.5609 | 63.0877 | 3231 | 43 | 3219 | 47 | 44 | 93.6170 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | het | 95.4593 | 97.4118 | 93.5835 | 85.3129 | 828 | 22 | 773 | 53 | 44 | 83.0189 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9143 | 85.8268 | 71.3376 | 72.6003 | 109 | 18 | 112 | 45 | 44 | 97.7778 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0984 | 99.3619 | 98.8363 | 71.4448 | 3737 | 24 | 3737 | 44 | 44 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0984 | 99.3619 | 98.8363 | 71.4448 | 3737 | 24 | 3737 | 44 | 44 | 100.0000 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | * | 80.8459 | 69.0003 | 97.6016 | 88.7044 | 22225 | 9985 | 22219 | 546 | 44 | 8.0586 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | * | 84.6397 | 74.3855 | 98.1731 | 83.5274 | 21821 | 7514 | 21817 | 406 | 44 | 10.8374 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | * | 57.9713 | 51.3595 | 66.5370 | 97.5315 | 170 | 161 | 171 | 86 | 44 | 51.1628 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | * | 57.7232 | 51.3514 | 65.9004 | 97.5500 | 171 | 162 | 172 | 89 | 44 | 49.4382 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | homalt | 99.7432 | 99.8141 | 99.6725 | 52.7072 | 13423 | 25 | 13390 | 44 | 44 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.2575 | 99.0755 | 93.5953 | 68.1797 | 643 | 6 | 643 | 44 | 44 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | * | * | 31.2766 | 42.8571 | 24.6231 | 95.7633 | 3 | 4 | 49 | 150 | 44 | 29.3333 | |
| ciseli-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 18.3432 | 95.1255 | 0 | 0 | 31 | 138 | 44 | 31.8841 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3027 | 98.3993 | 98.2063 | 71.9673 | 3504 | 57 | 3504 | 64 | 44 | 68.7500 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.0000 | 99.2084 | 89.3112 | 60.6909 | 376 | 3 | 376 | 45 | 44 | 97.7778 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | * | 97.6558 | 96.4524 | 98.8896 | 58.1164 | 4622 | 170 | 4631 | 52 | 44 | 84.6154 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9298 | 94.4344 | 99.5608 | 32.7290 | 9892 | 583 | 9974 | 44 | 44 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2663 | 99.4083 | 61.8644 | 83.3568 | 168 | 1 | 73 | 45 | 44 | 97.7778 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | het | 87.4792 | 79.8611 | 96.7041 | 73.8541 | 1380 | 348 | 1379 | 47 | 44 | 93.6170 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8037 | 99.8082 | 99.7991 | 72.6490 | 21857 | 42 | 21857 | 44 | 44 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.3112 | 100.0000 | 80.6867 | 66.4748 | 188 | 0 | 188 | 45 | 44 | 97.7778 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | * | 94.3425 | 98.0631 | 90.8939 | 92.7804 | 4911 | 97 | 4911 | 492 | 44 | 8.9431 | |