PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10051-10100 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.4957 | 77.2826 | 98.2029 | 77.4578 | 13577 | 3991 | 13607 | 249 | 50 | 20.0803 | |
| gduggal-bwaplat | SNP | tv | map_siren | * | 88.3540 | 79.4753 | 99.4660 | 75.2106 | 36503 | 9427 | 36507 | 196 | 50 | 25.5102 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | het | 95.2908 | 98.8427 | 91.9853 | 54.7039 | 9395 | 110 | 4017 | 350 | 50 | 14.2857 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | homalt | 97.1981 | 99.5131 | 94.9883 | 44.4780 | 7358 | 36 | 2445 | 129 | 50 | 38.7597 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.1298 | 99.3978 | 77.5574 | 83.2455 | 9078 | 55 | 8484 | 2455 | 50 | 2.0367 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.1298 | 99.3978 | 77.5574 | 83.2455 | 9078 | 55 | 8484 | 2455 | 50 | 2.0367 | |
| gduggal-bwafb | INDEL | * | map_siren | * | 96.8227 | 95.3306 | 98.3622 | 80.8381 | 7064 | 346 | 7147 | 119 | 50 | 42.0168 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.7133 | 96.8750 | 78.4810 | 46.7416 | 186 | 6 | 186 | 51 | 50 | 98.0392 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.6326 | 78.2787 | 89.7727 | 73.4807 | 382 | 106 | 474 | 54 | 50 | 92.5926 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | * | 92.6870 | 95.1299 | 90.3665 | 86.2223 | 1758 | 90 | 1726 | 184 | 50 | 27.1739 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | * | 92.8526 | 95.1436 | 90.6694 | 86.8647 | 1822 | 93 | 1788 | 184 | 50 | 27.1739 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | * | 92.8160 | 97.0360 | 88.9477 | 85.9871 | 7628 | 233 | 7565 | 940 | 50 | 5.3192 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | * | 93.8772 | 97.8167 | 90.2427 | 78.7360 | 10842 | 242 | 10821 | 1170 | 50 | 4.2735 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | * | 98.6420 | 98.8699 | 98.4152 | 72.8937 | 15835 | 181 | 15835 | 255 | 50 | 19.6078 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.8601 | 67.5701 | 97.6148 | 72.4420 | 2169 | 1041 | 2169 | 53 | 50 | 94.3396 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | hetalt | 80.5939 | 70.0444 | 94.8847 | 81.8132 | 947 | 405 | 946 | 51 | 50 | 98.0392 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.1382 | 78.3947 | 98.0769 | 64.9494 | 2852 | 786 | 2856 | 56 | 50 | 89.2857 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 45.8194 | 33.3333 | 73.2620 | 48.9071 | 56 | 112 | 137 | 50 | 50 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3400 | 95.3206 | 99.4468 | 70.6377 | 8861 | 435 | 8988 | 50 | 50 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | segdup | homalt | 99.7351 | 99.9348 | 99.5361 | 88.6997 | 10736 | 7 | 10729 | 50 | 50 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | * | het | 99.7418 | 99.8465 | 99.6372 | 20.0234 | 590796 | 908 | 591027 | 2152 | 50 | 2.3234 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.1394 | 62.6794 | 72.2826 | 73.6011 | 131 | 78 | 133 | 51 | 50 | 98.0392 | |
| jli-custom | INDEL | D1_5 | HG002compoundhet | het | 97.4993 | 98.1481 | 96.8589 | 75.3067 | 1696 | 32 | 1696 | 55 | 50 | 90.9091 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0403 | 26.6990 | 50.9615 | 85.3315 | 55 | 151 | 53 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 70.2222 | 65.2893 | 75.9615 | 65.2174 | 158 | 84 | 158 | 50 | 50 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | het | 74.0667 | 79.0210 | 69.6970 | 82.9193 | 113 | 30 | 115 | 50 | 50 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2357 | 99.3126 | 99.1588 | 62.5047 | 10836 | 75 | 10845 | 92 | 50 | 54.3478 | |
| jli-custom | SNP | ti | map_l100_m1_e0 | * | 99.4974 | 99.3240 | 99.6713 | 60.4603 | 47607 | 324 | 47605 | 157 | 50 | 31.8471 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | * | 99.4978 | 99.3362 | 99.6598 | 62.5143 | 48636 | 325 | 48634 | 166 | 50 | 30.1205 | |
| jli-custom | SNP | ti | map_l100_m2_e1 | * | 99.5011 | 99.3412 | 99.6614 | 62.5257 | 49159 | 326 | 49157 | 167 | 50 | 29.9401 | |
| jli-custom | SNP | ti | map_siren | het | 99.5420 | 99.4806 | 99.6035 | 52.5864 | 62058 | 324 | 62054 | 247 | 50 | 20.2429 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | homalt | 97.8586 | 99.7529 | 96.0349 | 55.1086 | 1211 | 3 | 1211 | 50 | 50 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | segdup | het | 90.6052 | 93.4944 | 87.8893 | 95.0934 | 503 | 35 | 508 | 70 | 50 | 71.4286 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.9390 | 96.8944 | 75.6098 | 24.9084 | 156 | 5 | 155 | 50 | 50 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l150_m2_e0 | het | 71.3414 | 65.0579 | 78.9685 | 85.0033 | 4718 | 2534 | 4716 | 1256 | 50 | 3.9809 | |
| ckim-dragen | INDEL | * | HG002complexvar | het | 99.6184 | 99.4569 | 99.7805 | 57.4574 | 45961 | 251 | 45458 | 100 | 50 | 50.0000 | |
| ckim-gatk | SNP | ti | HG002complexvar | het | 99.7549 | 99.5549 | 99.9557 | 17.5388 | 313365 | 1401 | 313315 | 139 | 50 | 35.9712 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2564 | 99.6414 | 98.8744 | 60.9154 | 35292 | 127 | 35487 | 404 | 50 | 12.3762 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | het | 72.5540 | 81.1189 | 65.6250 | 96.1522 | 464 | 108 | 462 | 242 | 50 | 20.6612 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7240 | 96.4410 | 99.0416 | 63.3898 | 6097 | 225 | 6097 | 59 | 50 | 84.7458 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7240 | 96.4410 | 99.0416 | 63.3898 | 6097 | 225 | 6097 | 59 | 50 | 84.7458 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8842 | 99.8788 | 94.0639 | 71.6321 | 824 | 1 | 824 | 52 | 50 | 96.1538 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8842 | 99.8788 | 94.0639 | 71.6321 | 824 | 1 | 824 | 52 | 50 | 96.1538 | |
| bgallagher-sentieon | SNP | * | HG002complexvar | het | 99.9449 | 99.9235 | 99.9662 | 18.4844 | 465141 | 356 | 465011 | 157 | 50 | 31.8471 | |
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | * | 98.8636 | 99.1953 | 98.5342 | 75.8607 | 19229 | 156 | 19226 | 286 | 50 | 17.4825 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | het | 98.7961 | 99.2748 | 98.3220 | 79.7541 | 19987 | 146 | 19981 | 341 | 50 | 14.6628 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e1 | het | 98.8048 | 99.2830 | 98.3312 | 79.8100 | 20217 | 146 | 20211 | 343 | 50 | 14.5773 | |
| bgallagher-sentieon | SNP | ti | map_l100_m1_e0 | * | 99.4715 | 99.5452 | 99.3979 | 64.6493 | 47713 | 218 | 47706 | 289 | 50 | 17.3010 | |