PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9701-9750 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | homalt | 99.6343 | 99.4783 | 99.7907 | 63.6404 | 27651 | 145 | 27652 | 58 | 54 | 93.1034 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | het | 98.8184 | 98.6930 | 98.9442 | 74.5223 | 8155 | 108 | 8153 | 87 | 54 | 62.0690 | |
| raldana-dualsentieon | SNP | ti | * | * | 99.9357 | 99.9205 | 99.9510 | 17.0225 | 2083853 | 1658 | 2083794 | 1022 | 54 | 5.2838 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.4933 | 61.7706 | 84.8485 | 75.6702 | 307 | 190 | 308 | 55 | 54 | 98.1818 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | hetalt | 95.1803 | 94.0828 | 96.3038 | 77.4750 | 1272 | 80 | 1433 | 55 | 54 | 98.1818 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0720 | 97.0065 | 97.1375 | 69.1696 | 2074 | 64 | 2070 | 61 | 54 | 88.5246 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | homalt | 83.3237 | 71.7644 | 99.3217 | 66.9963 | 8151 | 3207 | 8054 | 55 | 54 | 98.1818 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.7135 | 64.0275 | 98.8407 | 72.1806 | 5952 | 3344 | 5542 | 65 | 54 | 83.0769 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.4185 | 78.1955 | 87.1237 | 60.0801 | 104 | 29 | 521 | 77 | 54 | 70.1299 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 83.1523 | 78.6082 | 88.2540 | 57.7370 | 305 | 83 | 834 | 111 | 54 | 48.6486 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | het | 83.5804 | 79.9740 | 87.5274 | 89.7430 | 1845 | 462 | 2400 | 342 | 54 | 15.7895 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | het | 83.6323 | 80.1110 | 87.4775 | 89.7782 | 1877 | 466 | 2431 | 348 | 54 | 15.5172 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | * | 93.0649 | 98.2657 | 88.3869 | 84.2156 | 6516 | 115 | 6515 | 856 | 54 | 6.3084 | |
| hfeng-pmm2 | INDEL | D6_15 | * | homalt | 99.3853 | 99.6838 | 99.0886 | 51.6854 | 6306 | 20 | 6306 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9066 | 93.0451 | 96.8442 | 70.4071 | 1980 | 148 | 1964 | 64 | 54 | 84.3750 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1110 | 94.2922 | 91.9591 | 79.3103 | 826 | 50 | 629 | 55 | 54 | 98.1818 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9251 | 92.9511 | 96.9847 | 70.2893 | 1978 | 150 | 1962 | 61 | 54 | 88.5246 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.3531 | 80.8576 | 90.3780 | 61.9856 | 528 | 125 | 526 | 56 | 54 | 96.4286 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3797 | 99.1386 | 99.6220 | 59.2352 | 20025 | 174 | 20030 | 76 | 54 | 71.0526 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | het | 97.7971 | 97.8463 | 97.7479 | 82.8433 | 7769 | 171 | 7769 | 179 | 54 | 30.1676 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.5076 | 97.4127 | 93.6755 | 70.3048 | 753 | 20 | 1022 | 69 | 54 | 78.2609 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.9877 | 74.1728 | 96.7962 | 69.7744 | 4954 | 1725 | 4955 | 164 | 54 | 32.9268 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 39.7661 | 32.2275 | 51.9084 | 77.2174 | 68 | 143 | 68 | 63 | 54 | 85.7143 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | * | 96.1939 | 97.3404 | 95.0741 | 91.3522 | 4941 | 135 | 4941 | 256 | 54 | 21.0938 | |
| ghariani-varprowl | SNP | tv | HG002complexvar | het | 98.7696 | 99.5137 | 98.0366 | 26.9661 | 149998 | 733 | 150145 | 3007 | 54 | 1.7958 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | * | 95.4679 | 97.6521 | 93.3792 | 85.3184 | 4076 | 98 | 4076 | 289 | 54 | 18.6851 | |
| gduggal-snapvard | SNP | ti | map_siren | homalt | 97.9831 | 96.2100 | 99.8227 | 51.8924 | 36479 | 1437 | 36035 | 64 | 54 | 84.3750 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | hetalt | 78.9505 | 73.7426 | 84.9498 | 82.4839 | 997 | 355 | 508 | 90 | 54 | 60.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 77.5375 | 77.3507 | 77.7253 | 87.2862 | 2435 | 713 | 2467 | 707 | 54 | 7.6379 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.3474 | 85.5479 | 95.7174 | 70.9701 | 9181 | 1551 | 9186 | 411 | 54 | 13.1387 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.3659 | 78.3797 | 98.6795 | 72.5835 | 7914 | 2183 | 7921 | 106 | 54 | 50.9434 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 28.9733 | 87.0161 | 0 | 0 | 206 | 505 | 54 | 10.6931 | |
| gduggal-snapplat | INDEL | * | map_siren | het | 79.1743 | 73.0923 | 86.3603 | 90.4763 | 3295 | 1213 | 3552 | 561 | 54 | 9.6257 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 44.5914 | 1363 | 789 | 1361 | 63 | 54 | 85.7143 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.8504 | 59.7109 | 96.7642 | 46.8551 | 2189 | 1477 | 2183 | 73 | 54 | 73.9726 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | het | 93.7195 | 93.7668 | 93.6722 | 91.9387 | 2783 | 185 | 2783 | 188 | 54 | 28.7234 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | het | 94.0906 | 94.1918 | 93.9896 | 92.1804 | 3065 | 189 | 3065 | 196 | 54 | 27.5510 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7006 | 97.8372 | 99.5793 | 71.1392 | 47227 | 1044 | 47105 | 199 | 54 | 27.1357 | |
| ltrigg-rtg1 | SNP | ti | HG002complexvar | homalt | 99.9028 | 99.8341 | 99.9715 | 18.2456 | 193142 | 321 | 193049 | 55 | 54 | 98.1818 | |
| jli-custom | SNP | * | HG002complexvar | het | 99.9263 | 99.8859 | 99.9667 | 18.4399 | 464966 | 531 | 464872 | 155 | 54 | 34.8387 | |
| jli-custom | SNP | * | map_l125_m1_e0 | het | 99.0623 | 98.7919 | 99.3341 | 68.8001 | 28049 | 343 | 28046 | 188 | 54 | 28.7234 | |
| jli-custom | SNP | * | map_l125_m2_e0 | het | 99.0801 | 98.8232 | 99.3382 | 70.5778 | 28973 | 345 | 28970 | 193 | 54 | 27.9793 | |
| jli-custom | SNP | * | map_l125_m2_e1 | het | 99.0901 | 98.8360 | 99.3454 | 70.6523 | 29295 | 345 | 29292 | 193 | 54 | 27.9793 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5329 | 95.5556 | 97.5304 | 68.9206 | 2537 | 118 | 2488 | 63 | 54 | 85.7143 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0298 | 97.8096 | 98.2511 | 71.9586 | 3483 | 78 | 3483 | 62 | 54 | 87.0968 | |
| jmaeng-gatk | SNP | * | map_l125_m1_e0 | * | 84.2085 | 74.0000 | 97.6843 | 84.3364 | 33542 | 11785 | 33536 | 795 | 54 | 6.7925 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | * | 84.6294 | 74.6420 | 97.7024 | 85.2765 | 34875 | 11848 | 34869 | 820 | 54 | 6.5854 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.0526 | 89.4976 | 99.0961 | 23.7208 | 6110 | 717 | 6249 | 57 | 54 | 94.7368 | |