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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 184 185 186 187 188 189 190 191 192 ... 1720 1721 » 9351-9400 / 86044 show all
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.9690	95.8766	98.0866	62.3435	3139	135	3127	61	59	96.7213
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	96.0142	94.4383	97.6435	60.1906	2581	152	2569	62	59	95.1613
hfeng-pmm1	INDEL	I16_PLUS	*	*	97.6402	96.6756	98.6242	68.7700	6165	212	6165	86	59	68.6047
jlack-gatk	SNP	tv	map_l150_m1_e0	het	91.9297	98.8339	85.9271	86.1869	6865	81	6863	1124	59	5.2491
jlack-gatk	SNP	tv	map_l150_m2_e0	het	92.1348	98.8831	86.2488	87.0469	7171	81	7169	1143	59	5.1619
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.1021	96.7944	99.4457	64.3875	13316	441	13275	74	59	79.7297
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.1021	96.7944	99.4457	64.3875	13316	441	13275	74	59	79.7297
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	95.8010	94.0359	97.6336	60.3151	2570	163	2558	62	59	95.1613
hfeng-pmm2	SNP	*	HG002complexvar	*	99.8743	99.7689	99.9799	18.8346	752638	1743	752495	151	59	39.0728
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.9050	98.7578	72.9358	36.8116	159	2	159	59	59	100.0000
dgrover-gatk	SNP	*	map_l150_m1_e0	*	99.1521	99.1473	99.1569	77.1188	30348	261	30342	258	59	22.8682
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.3208	2370	0	2370	59	59	100.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	83.6814	77.2332	91.3043	82.9887	977	288	1029	98	59	60.2041
eyeh-varpipe	INDEL	*	map_l100_m0_e0	*	95.8235	95.2655	96.3881	94.1040	1489	74	2295	86	59	68.6047
ckim-isaac	INDEL	D16_PLUS	HG002complexvar	*	76.1289	68.2288	86.0979	58.5597	1121	522	1090	176	59	33.5227
gduggal-snapfb	INDEL	D6_15	HG002compoundhet	hetalt	76.8495	65.2926	93.3775	40.5512	5322	2829	846	60	59	98.3333
gduggal-snapvard	INDEL	D6_15	map_l100_m2_e1	*	65.5947	59.6364	72.8758	83.1683	164	111	223	83	59	71.0843
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	92.9747	88.1319	98.3807	75.7191	10181	1371	10207	168	59	35.1190
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	92.9747	88.1319	98.3807	75.7191	10181	1371	10207	168	59	35.1190
gduggal-snapplat	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	75.8773	72.5712	79.4989	87.1649	2241	847	2253	581	59	10.1549
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.9200	99.9179	97.9418	56.8515	6083	5	6091	128	59	46.0938
gduggal-snapvard	SNP	tv	map_l125_m0_e0	het	85.9375	96.6599	77.3564	84.6449	4254	147	4243	1242	59	4.7504
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	42.2807	34.7724	53.9244	82.6368	1780	3339	2068	1767	59	3.3390
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	94.0567	97.5229	90.8285	81.7751	19094	485	19163	1935	59	3.0491
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.0567	97.5229	90.8285	81.7751	19094	485	19163	1935	59	3.0491
jpowers-varprowl	SNP	ti	map_l250_m2_e1	*	95.5153	95.0355	96.0000	91.5044	4824	252	4824	201	59	29.3532
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	22.2306	13.2826	68.1223	82.0392	157	1025	156	73	59	80.8219
jpowers-varprowl	INDEL	*	map_l100_m0_e0	het	92.1663	93.3399	91.0220	88.6047	953	68	953	94	59	62.7660
jli-custom	SNP	*	map_l100_m0_e0	*	99.1662	98.8612	99.4730	63.5990	32467	374	32467	172	59	34.3023
jli-custom	SNP	*	map_l150_m2_e0	*	99.1640	98.8698	99.4599	73.1036	31492	360	31489	171	59	34.5029
jli-custom	SNP	*	map_l150_m2_e1	*	99.1717	98.8823	99.4628	73.1735	31850	360	31847	172	59	34.3023
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.1188	90.7483	91.4923	58.4348	667	68	656	61	59	96.7213
jli-custom	INDEL	D1_5	HG002complexvar	*	99.5191	99.2725	99.7668	57.5505	32477	238	32518	76	59	77.6316
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8267	99.9315	99.7221	75.0916	21884	15	21888	61	59	96.7213
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6913	98.9362	92.6526	62.5292	744	8	744	59	59	100.0000
jmaeng-gatk	INDEL	I6_15	*	het	98.6849	98.5049	98.8656	60.6937	9883	150	9848	113	59	52.2124
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.9463	95.1598	98.8011	63.5083	6016	306	6016	73	59	80.8219
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.9463	95.1598	98.8011	63.5083	6016	306	6016	73	59	80.8219
ltrigg-rtg1	INDEL	D1_5	*	hetalt	96.8514	94.4363	99.3932	69.7439	9675	570	9828	60	59	98.3333
ltrigg-rtg1	SNP	*	HG002complexvar	het	99.8148	99.6788	99.9511	18.4181	464005	1495	464235	227	59	25.9912
ltrigg-rtg1	SNP	tv	HG002complexvar	*	99.8396	99.7384	99.9410	21.7226	245511	644	245768	145	59	40.6897
jli-custom	SNP	*	map_l150_m1_e0	*	99.1511	98.8337	99.4706	71.1384	30252	357	30249	161	58	36.0248
jli-custom	SNP	ti	HG002complexvar	*	99.9464	99.9180	99.9748	17.5160	508019	417	507979	128	58	45.3125
jli-custom	SNP	tv	*	het	99.8561	99.9410	99.7714	21.8920	591347	349	591292	1355	58	4.2804
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1711	98.8017	99.5433	59.8357	19624	238	19617	90	58	64.4444
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	91.0964	94.2553	88.1423	65.1755	443	27	446	60	58	96.6667
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	77.9866	84.1808	72.6415	67.5841	149	28	154	58	58	100.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	40.4624	33.1754	51.8519	75.6757	70	141	70	65	58	89.2308

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