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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 183 184 185 186 187 188 189 190 191 ... 1720 1721 » 9301-9350 / 86044 show all
asubramanian-gatk	INDEL	I16_PLUS	*	homalt	97.0923	98.3985	95.8203	73.2208	1536	25	1536	67	60	89.5522
anovak-vg	INDEL	D1_5	map_l150_m1_e0	*	81.6618	83.6820	79.7368	89.6132	600	117	606	154	60	38.9610
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	35.8169	30.4348	43.5115	29.1892	49	112	57	74	60	81.0811
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	32.5234	37.5000	28.7129	27.3381	9	15	29	72	60	83.3333
anovak-vg	INDEL	D6_15	map_siren	*	73.2509	67.3870	80.2326	79.8971	343	166	345	85	60	70.5882
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4660	99.4311	99.5010	59.2336	19749	113	19742	99	60	60.6061
anovak-vg	INDEL	I6_15	map_siren	homalt	64.5973	83.3333	52.7397	70.1431	75	15	77	69	60	86.9565
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	94.9595	94.7878	95.1319	62.5104	2546	140	2560	131	60	45.8015
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0426	94.5944	99.6209	40.6185	15802	903	16029	61	60	98.3607
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0426	94.5944	99.6209	40.6185	15802	903	16029	61	60	98.3607
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	63.0411	72.4638	55.7870	87.7238	200	76	241	191	59	30.8901
anovak-vg	SNP	*	map_l150_m2_e0	homalt	88.0238	79.0922	99.2294	72.9596	9253	2446	9143	71	59	83.0986
anovak-vg	SNP	*	map_l150_m2_e1	homalt	88.0784	79.1748	99.2382	72.9549	9364	2463	9249	71	59	83.0986
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.5642	91.2162	64.4970	75.8226	135	13	109	60	59	98.3333
asubramanian-gatk	INDEL	I16_PLUS	HG002compoundhet	homalt	8.6957	100.0000	4.5455	78.0731	3	0	3	63	59	93.6508
asubramanian-gatk	INDEL	*	HG002complexvar	het	98.7623	98.2061	99.3248	58.2604	45383	829	45014	306	59	19.2810
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.3833	99.2084	86.4368	60.3102	376	3	376	59	59	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.1473	2370	0	2370	59	59	100.0000
anovak-vg	INDEL	D16_PLUS	HG002complexvar	homalt	75.3150	76.8166	73.8710	63.3570	222	67	229	81	59	72.8395
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	81.1540	77.3058	85.4054	60.1508	637	187	632	108	59	54.6296
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.3526	88.8889	96.0973	56.8254	1184	148	1699	69	59	85.5072
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1685	99.1166	97.2384	51.9217	11332	101	11373	323	59	18.2663
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	78.1128	65.0730	97.6884	78.4680	3253	1746	3254	77	59	76.6234
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	78.1128	65.0730	97.6884	78.4680	3253	1746	3254	77	59	76.6234
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.8586	98.2884	99.4354	55.5329	16883	294	16730	95	59	62.1053
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	82.0661	89.3056	75.9124	88.1111	643	77	624	198	59	29.7980
gduggal-bwavard	SNP	ti	map_l125_m0_e0	het	92.1685	97.6038	87.3066	84.9758	8065	198	8013	1165	59	5.0644
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	79.8732	68.2411	96.2857	80.2619	3034	1412	3033	117	59	50.4274
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	91.7238	98.6053	85.7401	86.4136	6787	96	6163	1025	59	5.7561
mlin-fermikit	INDEL	D1_5	map_l150_m2_e0	homalt	70.6131	69.0083	72.2944	81.5052	167	75	167	64	59	92.1875
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.2458	97.9315	96.5697	82.2940	19174	405	19284	685	59	8.6131
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.2458	97.9315	96.5697	82.2940	19174	405	19284	685	59	8.6131
ckim-gatk	SNP	*	map_l125_m2_e0	*	84.6410	74.5907	97.8215	85.1222	34851	11872	34845	776	59	7.6031
ciseli-custom	SNP	ti	map_l250_m0_e0	*	69.6954	66.4234	73.3065	95.3499	910	460	909	331	59	17.8248
ciseli-custom	INDEL	D1_5	map_l125_m2_e0	homalt	81.6849	82.4176	80.9651	86.8337	300	64	302	71	59	83.0986
ciseli-custom	INDEL	D1_5	map_l125_m2_e1	homalt	81.9169	82.5269	81.3158	86.8147	307	65	309	71	59	83.0986
ciseli-custom	INDEL	D1_5	segdup	homalt	89.2779	95.5432	83.7838	94.1865	343	16	341	66	59	89.3939
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2525	95.3621	99.2194	61.6689	8019	390	8008	63	59	93.6508
ciseli-custom	INDEL	*	map_l150_m2_e0	homalt	63.4799	54.2620	76.4706	91.7215	261	220	260	80	59	73.7500
ciseli-custom	INDEL	*	map_l150_m2_e1	homalt	63.5484	54.2683	76.6571	91.7065	267	225	266	81	59	72.8395
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.5348	93.8046	99.4286	27.8282	10417	688	10441	60	59	98.3333
rpoplin-dv42	INDEL	D1_5	*	hetalt	96.7748	94.2997	99.3834	61.0557	9661	584	9671	60	59	98.3333
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	90.7009	93.6842	87.9017	84.8598	623	42	465	64	59	92.1875
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	78.0920	69.5839	88.9706	48.6792	485	212	484	60	59	98.3333
rpoplin-dv42	SNP	tv	map_l100_m1_e0	het	99.1180	99.1503	99.0858	64.8238	15286	131	15282	141	59	41.8440
rpoplin-dv42	SNP	tv	map_l100_m2_e0	het	99.1350	99.1697	99.1004	66.6194	15646	131	15642	142	59	41.5493
rpoplin-dv42	SNP	tv	map_l100_m2_e1	het	99.1406	99.1781	99.1032	66.6722	15807	131	15803	143	59	41.2587
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.2215	96.1718	96.2714	63.1699	1859	74	1859	72	59	81.9444
hfeng-pmm1	INDEL	D16_PLUS	HG002compoundhet	het	84.9405	90.3704	80.1262	57.0461	366	39	254	63	59	93.6508
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.5000	95.0156	98.0316	58.6414	3050	160	3038	61	59	96.7213

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