PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
8951-9000 / 86044 show all
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
86.4112
86.4829
86.3395
72.9555
65910365110364
62.1359
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_11to50*
95.6571
97.7672
93.6362
64.2950
4729108437029764
21.5488
gduggal-bwafbSNPtimap_l150_m2_e1het
98.3690
98.4710
98.2671
79.5893
128161991281622664
28.3186
gduggal-bwafbSNPtv*homalt
99.9109
99.8520
99.9697
21.5631
37656555837657911464
56.1404
gduggal-bwavardINDELI6_15map_siren*
68.6489
65.2459
72.4265
84.2319
1991061977564
85.3333
gduggal-bwavardINDELI6_15map_sirenhet
76.8135
95.1049
64.4231
86.2252
13671347464
86.4865
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.9654
89.6725
78.9413
89.5816
7128268618364
34.9727
gduggal-bwavardSNPtvmap_l125_m2_e0het
93.1678
98.3624
88.4944
83.4152
1027117110245133264
4.8048
gduggal-bwafbSNPtilowcmp_SimpleRepeat_diTR_11to50het
95.0382
97.9352
92.3077
77.3745
308365309625864
24.8062
ckim-dragenINDELD1_5*het
99.5957
99.7625
99.4294
59.4097
873662088730850164
12.7745
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6864
99.1226
98.2540
71.3658
37283337146664
96.9697
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6864
99.1226
98.2540
71.3658
37283337146664
96.9697
ckim-gatkINDEL*HG002complexvarhet
99.6665
99.5780
99.7552
57.8728
460171954563611264
57.1429
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
93.0513
91.9890
94.1385
58.2808
3332910606664
96.9697
ciseli-customSNPtvmap_l125_m2_e1het
74.7394
68.6345
82.0365
81.7503
724333107243158664
4.0353
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.4504
99.3304
99.5707
59.9377
19729133197138564
75.2941
ckim-dragenINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6321
97.8377
97.4273
73.5072
34847734849264
69.5652
ciseli-customINDELD6_15map_l100_m2_e1*
53.5373
50.9091
56.4516
88.7681
14013514010864
59.2593
cchapple-customSNP*map_l250_m2_e0het
95.2059
95.7451
94.6728
91.6166
4973221497628064
22.8571
cchapple-customSNPtiHG002compoundhet*
99.2669
98.9816
99.5539
35.4095
17300178174067864
82.0513
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
71.9561
72.9860
70.9549
92.4413
302611203039124464
5.1447
gduggal-snapvardINDEL*func_cdshet
80.5822
87.3832
74.7634
51.0046
187272378064
80.0000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_11to50*
90.2938
94.7900
86.2049
78.5292
4603253456873164
8.7551
ghariani-varprowlINDELD1_5map_l100_m2_e1het
91.5448
98.9748
85.1525
89.0375
125513125621964
29.2237
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
61.2790
48.5452
83.0688
66.6372
3173363146464
100.0000
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
88.7492
96.2428
82.3383
73.2890
333133317164
90.1408
ghariani-varprowlSNP*map_l100_m1_e0homalt
99.3219
98.9853
99.6607
61.9023
26729274267299164
70.3297
ghariani-varprowlSNPtvmap_l125_m0_e0het
95.4481
98.8639
92.2604
83.4014
435150435136564
17.5342
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
36.7443
23.6507
82.3171
53.0758
872281581017464
36.7816
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
28.4562
16.8067
92.7350
41.3166
86042578686864
94.1176
gduggal-snapvardINDELI1_5segduphet
92.0218
96.8401
87.6603
96.3583
521175477764
83.1169
gduggal-snapvardSNPtilowcmp_SimpleRepeat_diTR_11to50het
80.1599
93.1385
70.3560
81.4743
29322162905122464
5.2288
gduggal-snapvardSNPtilowcmp_SimpleRepeat_quadTR_11to50*
90.8579
97.8289
84.8143
63.2556
1049923310461187364
3.4170
jlack-gatkSNPtvHG002complexvarhet
99.8776
99.8932
99.8620
22.3009
15057016115049420864
30.7692
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9266
94.4029
99.5890
36.4317
15770935159926664
96.9697
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9266
94.4029
99.5890
36.4317
15770935159926664
96.9697
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8837
95.6479
98.1519
65.9512
389017738777364
87.6712
hfeng-pmm1SNP*map_siren*
99.7072
99.5541
99.8607
53.5315
14557665214555620364
31.5271
dgrover-gatkINDELI16_PLUSHG002compoundhethomalt
8.5714
100.0000
4.4776
74.3295
3036464
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
76.3332
62.1432
98.9213
34.8317
6901420465117164
90.1408
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
66.0791
54.5455
83.7981
68.9868
52844063112264
52.4590
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.3121
98.9474
93.8136
84.0303
13161411077364
87.6712
egarrison-hhgaINDELD1_5*hetalt
77.5745
63.8360
98.8480
70.3665
6540370561787264
88.8889
egarrison-hhgaINDELI1_5HG002complexvarhomalt
99.1848
99.1225
99.2472
49.0370
133301181331510164
63.3663
egarrison-hhgaINDELD16_PLUS*homalt
94.6666
94.3853
94.9495
59.9952
15979515988563
74.1176
egarrison-hhgaINDELI16_PLUS*het
94.6145
93.4143
95.8459
68.1424
2539179253811063
57.2727
dgrover-gatkSNP**homalt
99.9839
99.9740
99.9938
17.2643
117985430711798307363
86.3014
dgrover-gatkSNP*map_l100_m2_e0het
99.3701
99.4698
99.2707
71.6313
461532464614233963
18.5841
dgrover-gatkSNP*map_l100_m2_e1het
99.3747
99.4755
99.2742
71.6392
466522464664134163
18.4751
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
97.2255
97.5000
96.9526
72.5894
29257529279263
68.4783