PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
851-900 / 86044 show all
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
57.4173
46.1301
76.0173
74.8627
838097861036832712260
69.0920
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
74.2102
70.4505
78.3938
47.6036
83663509835623032257
98.0026
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.6989
27.4371
43.6639
50.1227
16694414221928632250
78.5889
rpoplin-dv42INDEL**het
99.0459
99.3340
98.7595
59.2937
192840129319274924212250
92.9368
gduggal-snapvardINDELI1_5HG002complexvar*
89.7354
89.2273
90.2494
52.3644
2976835942866530972248
72.5864
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_11to50*
73.1367
73.8749
72.4131
44.0488
49741759714527222236
82.1455
jpowers-varprowlINDEL**homalt
92.2554
87.3566
97.7363
45.3284
1093461582610923325302235
88.3399
gduggal-bwafbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.5779
93.7628
97.4647
70.7003
8855858919453124592226
90.5246
gduggal-snapfbINDELD1_5**
96.2520
96.4735
96.0315
60.0578
141570517514286859042222
37.6355
anovak-vgSNPtimap_l100_m2_e1het
80.9356
90.4328
73.2435
73.3025
27998296227782101492220
21.8741
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
84.7836
98.6301
74.3463
50.8169
662492662522862211
96.7192
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
anovak-vgSNPtimap_l100_m2_e0het
80.8461
90.4056
73.1149
73.2980
27684293827470101012208
21.8592
ghariani-varprowlSNP**homalt
99.7891
99.9588
99.6200
19.7823
1179670486117979245002208
49.0667
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50het
89.4933
92.7475
86.4597
53.2254
1461711431448222682204
97.1781
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
81.6412
91.8702
73.4619
47.8010
6170546617322302203
98.7892
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
94.5069
96.4277
92.6612
46.2676
151975634202033282198
66.0457
gduggal-snapvardINDELI1_5HG002complexvarhet
90.2347
95.7007
85.3594
58.5913
174077821773030412197
72.2460
anovak-vgSNPtvHG002complexvarhet
97.4369
96.9012
97.9786
22.5474
146063467114434729782196
73.7408
ghariani-varprowlINDEL**homalt
92.0100
87.3111
97.2434
45.5820
1092891588310918330952195
70.9208
anovak-vgSNP*map_l150_m2_e1*
79.7323
86.0571
74.2735
80.0613
2771944912739894902194
23.1191
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
93.4659
95.5595
91.4621
42.7719
119655563473032422192
67.6126
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_11to50het
78.7482
91.5528
69.0859
44.8186
3349309597826752192
81.9439
gduggal-bwavardSNPti**
99.3434
99.0343
99.6545
21.4644
206537920139205725571332188
30.6743
anovak-vgSNPtimap_l100_m1_e0het
80.6718
90.3580
72.8613
71.8309
2705528872684599992187
21.8722
anovak-vgSNP*map_l150_m2_e0*
79.6445
85.9852
74.1747
80.0306
2738844642707694272180
23.1251
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.8694
82.8315
89.1386
45.6102
1843038201840022422180
97.2346
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
48.9376
37.8496
69.2135
34.1472
14752422492821922178
99.3613
anovak-vgSNP*map_l100_m0_e0*
81.2078
85.4511
77.3660
74.7301
2806347782774581172172
26.7587
mlin-fermikitINDELD1_5HG002compoundhet*
74.1830
69.7262
79.2484
64.3487
85313704852022312171
97.3106
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.4545
89.1929
89.7177
61.8267
2718632942596729762168
72.8495
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.4545
89.1929
89.7177
61.8267
2718632942596729762168
72.8495
gduggal-bwavardSNP*HG002complexvarhet
98.2730
97.3044
99.2610
20.1947
4529521254844165932882162
65.7543
mlin-fermikitINDELI6_15**
85.1815
80.6671
90.2311
47.3715
2002447992010821772161
99.2650
jpowers-varprowlINDEL*HG002compoundhethomalt
33.5403
91.1079
20.5534
62.6200
6256162424122157
89.4279
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
75.6874
87.3937
66.7467
68.5588
1202117341251162332150
34.4938
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
75.6874
87.3937
66.7467
68.5588
1202117341251162332150
34.4938
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
84.9953
81.8023
88.4476
37.9806
1684837481683621992149
97.7262
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.7140
88.5981
95.0570
53.8425
3839449414423023002147
93.3478
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
63.5773
97.5422
47.1569
24.3464
190548192421562141
99.3043
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
45.1124
44.6159
45.6200
29.5676
13301651188022412138
95.4038
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.0228
69.6517
45.4722
29.4037
420183186822402137
95.4018
anovak-vgSNP*map_l150_m2_e1het
76.0838
90.1144
65.8336
81.6880
1835020131814994192135
22.6669
mlin-fermikitINDELI1_5HG002compoundhet*
72.7922
67.2062
79.3909
62.5413
83044052829021522132
99.0706
anovak-vgSNP*HG002complexvarhomalt
98.2895
97.5091
99.0824
19.5966
281387718827329325312130
84.1565
ghariani-varprowlINDEL*HG002compoundhethomalt
33.4304
91.1079
20.4709
62.9558
6256162624322127
87.4589