PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8901-8950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | het | 77.2586 | 98.4127 | 63.5897 | 89.5161 | 124 | 2 | 124 | 71 | 65 | 91.5493 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | * | 68.8299 | 66.6667 | 71.1382 | 89.1868 | 176 | 88 | 175 | 71 | 65 | 91.5493 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 77.5758 | 97.7099 | 64.3216 | 90.1143 | 128 | 3 | 128 | 71 | 65 | 91.5493 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | * | 90.5689 | 94.8193 | 86.6832 | 88.0250 | 787 | 43 | 1048 | 161 | 65 | 40.3727 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | het | 82.6056 | 96.1278 | 72.4186 | 92.5288 | 3128 | 126 | 3114 | 1186 | 65 | 5.4806 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.5998 | 93.5118 | 72.3797 | 87.9363 | 3877 | 269 | 3805 | 1452 | 65 | 4.4766 | |
| ghariani-varprowl | SNP | * | segdup | homalt | 99.4257 | 99.9069 | 98.9491 | 89.5722 | 10733 | 10 | 10734 | 114 | 65 | 57.0175 | |
| gduggal-snapvard | INDEL | * | func_cds | * | 83.0794 | 82.2472 | 83.9286 | 43.6242 | 366 | 79 | 423 | 81 | 65 | 80.2469 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.8750 | 100.0000 | 39.7380 | 88.6830 | 1 | 0 | 182 | 276 | 65 | 23.5507 | |
| jmaeng-gatk | SNP | * | HG002complexvar | het | 99.7155 | 99.4778 | 99.9544 | 19.1665 | 463066 | 2431 | 462938 | 211 | 65 | 30.8057 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.0329 | 82.8169 | 91.7012 | 56.1220 | 882 | 183 | 884 | 80 | 65 | 81.2500 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | homalt | 99.3441 | 99.0075 | 99.6831 | 63.9191 | 26735 | 268 | 26735 | 85 | 65 | 76.4706 | |
| jpowers-varprowl | SNP | * | segdup | homalt | 99.4812 | 99.9441 | 99.0225 | 89.9716 | 10737 | 6 | 10738 | 106 | 65 | 61.3208 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | het | 94.8319 | 95.4783 | 94.1941 | 83.6101 | 4202 | 199 | 4202 | 259 | 65 | 25.0965 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | * | 91.6633 | 90.7525 | 92.5926 | 94.5780 | 1001 | 102 | 1000 | 80 | 65 | 81.2500 | |
| jli-custom | INDEL | D1_5 | * | het | 99.7840 | 99.7088 | 99.8593 | 56.7542 | 87319 | 255 | 87313 | 123 | 65 | 52.8455 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.5065 | 98.1366 | 71.1712 | 37.2881 | 158 | 3 | 158 | 64 | 64 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | * | 89.9408 | 82.7455 | 98.5068 | 78.6206 | 40513 | 8448 | 40506 | 614 | 64 | 10.4235 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | * | 90.0240 | 82.8837 | 98.5106 | 78.5961 | 41015 | 8470 | 41008 | 620 | 64 | 10.3226 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | * | 84.3510 | 75.2217 | 96.0024 | 42.9312 | 1612 | 531 | 1585 | 66 | 64 | 96.9697 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | hetalt | 91.1572 | 85.1041 | 98.1374 | 66.7119 | 3148 | 551 | 3372 | 64 | 64 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | * | 92.1981 | 91.1068 | 93.3159 | 87.0820 | 1424 | 139 | 1424 | 102 | 64 | 62.7451 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e1 | * | 93.6537 | 92.4703 | 94.8677 | 84.4955 | 1793 | 146 | 1793 | 97 | 64 | 65.9794 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | * | 94.7100 | 90.6791 | 99.1159 | 32.9210 | 7958 | 818 | 7848 | 70 | 64 | 91.4286 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1551 | 97.3006 | 99.0247 | 63.5436 | 17338 | 481 | 17362 | 171 | 64 | 37.4269 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.1282 | 96.9069 | 99.3807 | 45.7062 | 10151 | 324 | 10430 | 65 | 64 | 98.4615 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | * | 66.4730 | 62.7907 | 70.6140 | 85.6874 | 162 | 96 | 161 | 67 | 64 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | het | 74.6753 | 91.2698 | 63.1868 | 86.5683 | 115 | 11 | 115 | 67 | 64 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | * | 66.7463 | 62.8788 | 71.1207 | 86.3369 | 166 | 98 | 165 | 67 | 64 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 74.6835 | 90.0763 | 63.7838 | 87.1438 | 118 | 13 | 118 | 67 | 64 | 95.5224 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1082 | 88.4268 | 98.3131 | 60.7196 | 5379 | 704 | 5420 | 93 | 64 | 68.8172 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.0808 | 92.8872 | 99.5018 | 43.2116 | 12785 | 979 | 12981 | 65 | 64 | 98.4615 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | * | 96.7965 | 95.1586 | 98.4917 | 56.6586 | 4560 | 232 | 4571 | 70 | 64 | 91.4286 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | * | 93.9813 | 92.4528 | 95.5612 | 63.5376 | 1519 | 124 | 1507 | 70 | 64 | 91.4286 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | * | 67.1787 | 55.2699 | 85.6287 | 82.9069 | 430 | 348 | 429 | 72 | 64 | 88.8889 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 75.6857 | 66.9578 | 87.0301 | 80.4555 | 460 | 227 | 463 | 69 | 64 | 92.7536 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.4044 | 84.5779 | 76.6234 | 63.7476 | 521 | 95 | 590 | 180 | 64 | 35.5556 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.9442 | 87.3239 | 49.2063 | 47.2803 | 62 | 9 | 62 | 64 | 64 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.5473 | 67.1642 | 86.3216 | 61.1351 | 360 | 176 | 467 | 74 | 64 | 86.4865 | |
| qzeng-custom | SNP | * | map_l150_m1_e0 | homalt | 80.0720 | 67.1516 | 99.1488 | 70.4941 | 7570 | 3703 | 7455 | 64 | 64 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | * | 98.0856 | 98.0500 | 98.1212 | 53.9878 | 8749 | 174 | 9244 | 177 | 64 | 36.1582 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | * | 82.1438 | 84.1902 | 80.1944 | 89.9891 | 655 | 123 | 660 | 163 | 64 | 39.2638 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6669 | 97.8687 | 99.4782 | 72.3688 | 15245 | 332 | 15252 | 80 | 64 | 80.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.6973 | 94.5364 | 98.9593 | 25.4960 | 6454 | 373 | 6466 | 68 | 64 | 94.1176 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0075 | 95.3292 | 98.7460 | 27.5468 | 5184 | 254 | 5197 | 66 | 64 | 96.9697 | |
| bgallagher-sentieon | INDEL | * | * | hetalt | 95.9976 | 92.5387 | 99.7251 | 56.9311 | 23354 | 1883 | 23582 | 65 | 64 | 98.4615 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 87.8383 | 97.0370 | 80.2326 | 59.6717 | 393 | 12 | 276 | 68 | 64 | 94.1176 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.2544 | 90.2041 | 90.3047 | 58.2659 | 663 | 72 | 652 | 70 | 64 | 91.4286 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | * | 83.2803 | 71.6572 | 99.4040 | 79.8206 | 34346 | 13585 | 34357 | 206 | 64 | 31.0680 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | * | 97.2391 | 97.2230 | 97.2552 | 80.6160 | 3431 | 98 | 3685 | 104 | 64 | 61.5385 | |