PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
8801-8850 / 86044 show all
qzeng-customINDEL*map_l100_m1_e0*
83.9800
79.0296
89.5920
87.4621
2834752366742666
15.4930
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.7448
77.6461
93.2722
41.8494
9172649156666
100.0000
jlack-gatkINDELI6_15HG002complexvarhomalt
97.1497
99.6705
94.7533
55.9047
1210412106766
98.5075
jlack-gatkSNP*map_l250_m1_e0*
93.2444
97.7569
89.1302
92.5027
7060162706086166
7.6655
jlack-gatkSNPti*homalt
99.9698
99.9522
99.9874
15.9699
80265438480264410166
65.3465
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2948
99.3780
99.2118
59.1033
83085283086666
100.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2948
99.3780
99.2118
59.1033
83085283086666
100.0000
hfeng-pmm3INDEL*HG002complexvarhomalt
99.7967
99.8594
99.7340
55.8371
2698938269997266
91.6667
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.3708
77.0533
93.2238
41.8507
9102719086666
100.0000
gduggal-bwavardSNPtimap_l125_m0_e0*
94.2056
97.3045
91.2979
82.1654
1241834412317117466
5.6218
eyeh-varpipeSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.1613
99.3118
99.0113
50.7900
200601391902719066
34.7368
gduggal-bwaplatINDEL*HG002compoundhethetalt
83.3202
71.6362
99.5583
64.0234
180387142180318066
82.5000
gduggal-bwavardINDEL*HG002complexvarhomalt
95.0919
90.9942
99.5761
40.5691
2459324342395810266
64.7059
gduggal-bwafbINDELI1_5HG002compoundhethetalt
91.0057
84.5844
98.4821
73.0807
9454172342826666
100.0000
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.1414
92.1902
94.1126
70.7669
10869210876866
97.0588
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
85.0370
96.2351
76.1733
88.6760
145757147746266
14.2857
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.2328
95.1446
99.4146
48.4901
92147112096666
100.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
97.6743
98.7234
96.6472
38.6953
464619896966
95.6522
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
46.7522
70.4861
34.9754
65.3140
2038528452866
12.5000
gduggal-snapfbINDELI6_15HG002complexvarhetalt
60.2641
50.3679
75.0000
58.1818
6166072076966
95.6522
gduggal-snapvardINDELD1_5map_l100_m0_e0het
84.5932
97.4619
74.7264
88.6901
5761575125466
25.9843
gduggal-snapvardSNPtimap_l250_m2_e1het
82.7367
96.1200
72.6248
92.6041
31711283157119066
5.5462
ghariani-varprowlINDEL*map_l100_m0_e0*
90.4000
93.9859
87.0777
93.2660
146994146921866
30.2752
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
59.8657
45.0761
89.0995
75.7842
5636865646966
95.6522
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.8657
45.0761
89.0995
75.7842
5636865646966
95.6522
ghariani-varprowlINDELD1_5map_l100_m2_e1*
91.5085
94.4817
88.7167
87.2602
1832107183223366
28.3262
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4096
99.6175
99.2025
47.1436
83343283346766
98.5075
gduggal-snapvardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
24.8549
88.5733
0025777766
8.4942
gduggal-snapplatINDELD6_15HG002complexvarhomalt
52.8983
39.9487
78.2700
68.0162
46770237110366
64.0777
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
25.0124
14.6182
86.5625
67.4300
55932655548666
76.7442
jpowers-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.3080
99.3771
99.2391
58.1058
170701071708513166
50.3817
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0483
92.8307
99.4969
46.1918
130261006132506766
98.5075
jli-customSNP**homalt
99.9850
99.9771
99.9928
17.2570
117989127011798758566
77.6471
jli-customSNPtimap_siren*
99.6599
99.5825
99.7375
51.1882
999364199992926366
25.0951
jmaeng-gatkINDEL**hetalt
95.2835
91.2311
99.7126
56.1602
230242213232476766
98.5075
ltrigg-rtg1INDELI16_PLUS**
90.7186
84.0050
98.5984
48.4241
5357102052767566
88.0000
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0609
90.1200
98.3621
57.5242
548260155259266
71.7391
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.1277
91.4144
97.0070
58.8480
220420722046866
97.0588
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.2675
79.8913
89.1509
81.5972
88222294511566
57.3913
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
91.8070
92.9697
90.6730
69.1101
767587687966
83.5443
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.8070
92.9697
90.6730
69.1101
767587687966
83.5443
eyeh-varpipeINDEL*map_l125_m2_e0*
96.4662
96.0383
96.8979
94.3332
21098729059366
70.9677
dgrover-gatkINDELI16_PLUS*homalt
97.7415
99.8078
95.7591
72.2497
1558315586966
95.6522
dgrover-gatkINDELI1_5HG002compoundhethet
95.2481
98.5882
92.1269
86.8653
838127846766
98.5075
ckim-isaacINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9438
72.3670
91.8269
61.8148
1333509133711966
55.4622
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
82.1817
76.4706
88.8147
52.8718
5331645326766
98.5075
ckim-vqsrINDELI16_PLUSHG002compoundhethomalt
8.3333
100.0000
4.3478
72.9412
3036666
100.0000
dgrover-gatkINDELD16_PLUS*het
97.8168
99.3036
96.3739
78.4222
313722289710966
60.5505
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.4629
98.9555
94.0928
85.7865
18001915619866
67.3469
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.4629
98.9555
94.0928
85.7865
18001915619866
67.3469