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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
8651-8700 / 86044 show all
gduggal-snapvardINDELI1_5map_l125_m2_e0het
88.5120
98.7928
80.1693
90.7999
491666316468
41.4634
gduggal-snapvardINDELI1_5segdup*
91.3324
90.4627
92.2190
95.0889
9581019608168
83.9506
gduggal-snapvardSNPtimap_l250_m1_e0*
86.1545
95.0207
78.8017
91.2590
43512284327116468
5.8419
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
94.5086
98.3261
90.9764
72.8370
135123135113468
50.7463
ghariani-varprowlSNP*map_l100_m2_e1homalt
99.3161
99.0071
99.6271
64.4501
275202762752010368
66.0194
ghariani-varprowlSNPtvmap_l125_m0_e0*
96.2771
98.0848
94.5349
81.3241
6504127650437668
18.0851
ghariani-varprowlINDELD16_PLUS*homalt
72.0773
58.8061
93.0841
70.1867
9956979967468
91.8919
rpoplin-dv42INDELI6_15*homalt
97.7056
96.5700
98.8683
48.6914
602521460286968
98.5507
rpoplin-dv42SNP*map_l250_m2_e0*
98.3456
98.0089
98.6847
88.0100
7728157772810368
66.0194
rpoplin-dv42SNPtimap_l150_m2_e0het
99.0005
98.8200
99.1816
75.9652
127291521272510568
64.7619
rpoplin-dv42SNPtimap_l150_m2_e1het
98.9954
98.8167
99.1746
76.0502
128611541285710768
63.5514
rpoplin-dv42INDEL*HG002complexvarhetalt
94.3915
91.0246
98.0170
68.2440
336733234607068
97.1429
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2570
93.3938
99.3014
31.9625
978369298086968
98.5507
mlin-fermikitINDEL*map_l100_m1_e0het
74.2630
62.0134
92.5433
78.0056
1386849139011268
60.7143
mlin-fermikitINDEL*map_l100_m2_e0het
74.8173
62.7655
92.5973
79.8974
1448859145111668
58.6207
mlin-fermikitINDEL*map_l125_m0_e0homalt
64.5756
61.6197
67.8295
81.8820
1751091758368
81.9277
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
88.3125
86.2357
90.4918
71.6894
8271328288768
78.1609
qzeng-customINDEL*map_l100_m2_e0*
84.2312
79.3934
89.6968
87.9330
2932761378743568
15.6322
mlin-fermikitINDELI1_5map_l100_m2_e0*
72.7673
60.4532
91.3812
78.4780
8275418277868
87.1795
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
67.5878
77.1812
60.1156
69.6491
115341046968
98.5507
qzeng-customSNP*map_l100_m0_e0homalt
82.4060
70.4991
99.1522
62.7863
8192342880706968
98.5507
qzeng-customSNP*segdup*
98.6778
98.8634
98.4928
92.2719
277483192751242168
16.1520
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.2211
97.0040
99.4690
43.1148
13372413133017168
95.7746
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3014
97.1593
99.4708
45.1343
14365420142847668
89.4737
ltrigg-rtg2SNP*HG002complexvarhomalt
99.9218
99.8676
99.9761
19.6026
2881923822881186968
98.5507
eyeh-varpipeINDEL*map_l100_m1_e0het
96.1706
95.7494
96.5955
81.6758
214095289410268
66.6667
eyeh-varpipeINDEL*map_l125_m2_e1*
96.4393
96.0449
96.8369
94.4522
21378829399668
70.8333
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.5535
97.1688
93.9910
58.3407
3535103353522668
30.0885
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.2348
96.1840
92.3630
49.0134
2697107269722368
30.4933
egarrison-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.0678
81.0458
91.7533
79.3558
1240290123511168
61.2613
egarrison-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.0678
81.0458
91.7533
79.3558
1240290123511168
61.2613
egarrison-hhgaINDELI1_5HG002compoundhethet
88.5536
91.2941
85.9729
82.4603
7767476012468
54.8387
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
92.6853
87.1155
99.0159
25.1484
7052104372447268
94.4444
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.8671
76.7932
89.9844
83.5648
1092330115012868
53.1250
dgrover-gatkINDEL**hetalt
96.9073
94.2584
99.7094
58.4640
237881449240187068
97.1429
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.7974
97.3813
88.6256
72.0653
595165617268
94.4444
dgrover-gatkSNP*map_l125_m1_e0*
99.3215
99.3139
99.3291
72.7346
450163114501030468
22.3684
dgrover-gatkSNPtimap_siren*
99.6765
99.6403
99.7128
55.1320
999943619997928868
23.6111
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.4966
99.3171
99.6769
61.8156
28067193280709168
74.7253
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
97.4514
96.5009
98.4209
44.2767
6481235723011668
58.6207
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
13.8298
27.6923
00138168
83.9506
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
52.3244
38.4502
81.8636
44.8624
1047167649210968
62.3853
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
95.4096
96.1426
94.6877
69.8615
13215313197468
91.8919
jpowers-varprowlSNP*map_l100_m2_e0homalt
99.3403
99.0226
99.6599
66.2832
27254269272549368
73.1183
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50*
98.3288
99.0403
97.6276
52.2232
106291031065825968
26.2548
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2231
99.8046
98.6484
46.1418
51071051097068
97.1429
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0232
93.5508
94.5004
64.2877
12338512207168
95.7746
ckim-gatkINDELD16_PLUSHG002compoundhethet
88.7912
99.7531
80.0000
59.4286
40412847168
95.7746
ciseli-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
20.2658
93.8269
006124068
28.3333
ciseli-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
20.2658
93.8269
006124068
28.3333