PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 165 166 167 168 169 170 171 172 173 ... 1720 1721 » 8401-8450 / 86044 show all
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	91.2274	96.9697	86.1272	74.9275	448	14	447	72	72	100.0000
hfeng-pmm2	SNP	*	*	homalt	99.9900	99.9890	99.9910	18.1427	1180031	130	1180018	106	72	67.9245
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.3252	96.0422	83.4862	59.5922	364	15	364	72	72	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1747	97.0673	99.3076	46.3948	10757	325	10757	75	72	96.0000
hfeng-pmm2	SNP	ti	*	*	99.9484	99.9340	99.9629	17.4396	2084135	1376	2084077	774	72	9.3023
jlack-gatk	INDEL	I1_5	HG002complexvar	*	99.5214	99.3556	99.6877	57.0609	33148	215	33197	104	72	69.2308
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	91.7011	87.0959	96.8206	45.2421	9672	1433	2223	73	72	98.6301
gduggal-bwafb	INDEL	D16_PLUS	HG002complexvar	homalt	81.9487	86.8512	77.5701	62.8472	251	38	249	72	72	100.0000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	86.3919	88.4669	84.4120	88.2444	1258	164	1213	224	72	32.1429
gduggal-bwavard	SNP	tv	map_l125_m1_e0	*	94.9586	97.9708	92.1260	78.9367	15691	325	15643	1337	72	5.3852
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	81.6793	71.3911	95.4321	75.7937	5994	2402	5996	287	72	25.0871
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	76.5888	63.9069	95.5499	83.7077	3736	2110	3736	174	72	41.3793
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.6607	91.0166	98.6088	31.6968	6079	600	5954	84	72	85.7143
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	50.2734	33.9647	96.7108	42.6363	1847	3591	2117	72	72	100.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.2475	93.6213	99.0253	42.3352	6913	471	12598	124	72	58.0645
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.6431	96.1084	99.2277	42.1750	10002	405	15032	117	72	61.5385
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	76.5888	63.9069	95.5499	83.7077	3736	2110	3736	174	72	41.3793
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.0366	91.2990	99.0933	69.4457	15498	1477	15300	140	72	51.4286
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.0366	91.2990	99.0933	69.4457	15498	1477	15300	140	72	51.4286
gduggal-snapvard	SNP	*	segdup	*	98.2794	97.3955	99.1795	93.1728	27336	731	27076	224	72	32.1429
gduggal-snapvard	SNP	ti	map_l250_m2_e0	*	86.8868	95.2476	79.8754	91.6627	4770	238	4743	1195	72	6.0251
jli-custom	INDEL	D6_15	HG002compoundhet	homalt	40.0000	100.0000	25.0000	72.0117	24	0	24	72	72	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.1965	97.0144	99.4078	64.7466	15597	480	15611	93	72	77.4194
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.1965	97.0144	99.4078	64.7466	15597	480	15611	93	72	77.4194
jpowers-varprowl	SNP	tv	map_siren	homalt	99.3790	99.3213	99.4367	59.4375	17123	117	17123	97	72	74.2268
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	93.1299	89.8491	96.6594	59.1348	4346	491	4456	154	72	46.7532
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	92.3491	87.7265	97.4860	57.2867	4260	596	4343	112	72	64.2857
dgrover-gatk	INDEL	I16_PLUS	HG002compoundhet	*	94.7743	93.0938	96.5167	53.0120	1995	148	1995	72	72	100.0000
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	*	85.7883	79.5496	93.0889	62.2772	1307	336	1320	98	72	73.4694
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.6938	96.4613	92.9899	50.7135	3053	112	3051	230	72	31.3043
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.0004	93.1933	98.9817	26.3036	7544	551	7582	78	72	92.3077
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	95.7830	98.8722	92.8811	83.4809	1315	15	1109	85	72	84.7059
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.3991	97.0540	88.1703	71.9469	593	18	559	75	71	94.6667
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	46.3519	40.9091	53.4653	59.0264	99	143	108	94	71	75.5319
anovak-vg	INDEL	I6_15	map_siren	*	52.3607	48.1967	57.3123	74.7000	147	158	145	108	71	65.7407
anovak-vg	INDEL	*	map_l150_m1_e0	het	70.8356	70.4094	71.2670	91.2380	602	253	630	254	71	27.9528
asubramanian-gatk	INDEL	D1_5	HG002compoundhet	hetalt	96.4959	93.9311	99.2046	59.5968	9596	620	9604	77	71	92.2078
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.6186	98.0736	93.2836	55.1652	560	11	1000	72	71	98.6111
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	94.9783	96.9173	93.1153	84.1668	1289	41	1082	80	71	88.7500
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	86.6953	95.6926	79.2444	84.6511	2266	102	1783	467	71	15.2034
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	97.1915	99.5930	94.9031	45.9580	18109	74	17428	936	71	7.5855
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	94.2189	98.4978	90.2963	84.2175	6557	100	6216	668	71	10.6287
eyeh-varpipe	SNP	tv	HG002complexvar	het	99.6993	99.8812	99.5181	20.4147	150555	179	142480	690	71	10.2899
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	65.6349	65.9236	65.3487	72.3679	828	428	909	482	71	14.7303
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	43.4388	29.2157	84.6482	63.0999	447	1083	397	72	71	98.6111
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	43.4388	29.2157	84.6482	63.0999	447	1083	397	72	71	98.6111
gduggal-bwafb	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	80.3666	72.7564	89.7547	59.7561	2270	850	622	71	71	100.0000
gduggal-bwavard	INDEL	*	map_l125_m1_e0	*	91.5570	95.1115	88.2586	89.4208	2004	103	2007	267	71	26.5918

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge