PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8251-8300 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.0374 | 100.0000 | 78.6311 | 86.1918 | 469 | 0 | 471 | 128 | 75 | 58.5938 | |
| jpowers-varprowl | SNP | tv | map_l150_m1_e0 | het | 95.7277 | 95.9689 | 95.4878 | 82.3230 | 6666 | 280 | 6666 | 315 | 75 | 23.8095 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0155 | 96.3678 | 99.7204 | 49.6879 | 30830 | 1162 | 31028 | 87 | 75 | 86.2069 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.8981 | 99.9175 | 97.8993 | 62.0929 | 3635 | 3 | 3635 | 78 | 75 | 96.1538 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.2447 | 89.8649 | 59.0164 | 73.8944 | 133 | 15 | 108 | 75 | 75 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.3171 | 100.0000 | 3.7975 | 66.5254 | 3 | 0 | 3 | 76 | 75 | 98.6842 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.4697 | 91.8338 | 99.4055 | 29.1133 | 12640 | 1124 | 12707 | 76 | 75 | 98.6842 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.4203 | 91.7332 | 99.4161 | 31.9693 | 12872 | 1160 | 12941 | 76 | 75 | 98.6842 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.4289 | 93.6983 | 89.2667 | 80.9128 | 907 | 61 | 840 | 101 | 75 | 74.2574 | |
| astatham-gatk | INDEL | I16_PLUS | HG002compoundhet | * | 94.5316 | 92.7671 | 96.3645 | 52.8349 | 1988 | 155 | 1988 | 75 | 75 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | * | 99.2090 | 98.6948 | 99.7287 | 58.8075 | 32288 | 427 | 32347 | 88 | 75 | 85.2273 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | het | 71.5575 | 68.7561 | 74.5968 | 89.0375 | 702 | 319 | 740 | 252 | 75 | 29.7619 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | het | 71.2728 | 70.4545 | 72.1103 | 91.6230 | 651 | 273 | 680 | 263 | 75 | 28.5171 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5863 | 99.2023 | 97.9779 | 71.0352 | 3731 | 30 | 3731 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.6982 | 92.8933 | 98.6777 | 52.9173 | 6418 | 491 | 6418 | 86 | 75 | 87.2093 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5863 | 99.2023 | 97.9779 | 71.0352 | 3731 | 30 | 3731 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I6_15 | HG002complexvar | * | 97.6141 | 96.8698 | 98.3700 | 57.6968 | 4642 | 150 | 4647 | 77 | 75 | 97.4026 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7289 | 88.8607 | 96.9493 | 47.5369 | 2449 | 307 | 2447 | 77 | 75 | 97.4026 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7868 | 96.4686 | 99.1416 | 42.5996 | 9124 | 334 | 9124 | 79 | 75 | 94.9367 | |
| ciseli-custom | SNP | tv | map_l100_m2_e0 | het | 79.2677 | 74.3804 | 84.8423 | 77.0207 | 11735 | 4042 | 11732 | 2096 | 75 | 3.5782 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | het | 79.3676 | 74.5012 | 84.9142 | 77.0349 | 11874 | 4064 | 11871 | 2109 | 75 | 3.5562 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2927 | 99.2413 | 99.3442 | 65.4836 | 12426 | 95 | 12270 | 81 | 75 | 92.5926 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 8.3916 | 12.7660 | 6.2500 | 77.0883 | 6 | 41 | 6 | 90 | 75 | 83.3333 | |
| ckim-gatk | INDEL | I16_PLUS | HG002compoundhet | * | 94.2299 | 92.2072 | 96.3432 | 52.0122 | 1976 | 167 | 1976 | 75 | 75 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3323 | 99.0070 | 93.7984 | 50.0158 | 7378 | 74 | 7396 | 489 | 75 | 15.3374 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | het | 96.2824 | 98.9244 | 93.7778 | 83.5770 | 7174 | 78 | 7174 | 476 | 75 | 15.7563 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e1 | het | 96.2978 | 98.9385 | 93.7943 | 83.6297 | 7270 | 78 | 7270 | 481 | 75 | 15.5925 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7557 | 87.7049 | 55.2000 | 61.5975 | 107 | 15 | 138 | 112 | 75 | 66.9643 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 67.7466 | 98.0570 | 51.7501 | 74.5351 | 3028 | 60 | 3090 | 2881 | 75 | 2.6033 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 87.0072 | 98.9272 | 77.6508 | 87.8604 | 3873 | 42 | 3874 | 1115 | 74 | 6.6368 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 13.8244 | 10.6122 | 19.8251 | 85.5882 | 52 | 438 | 68 | 275 | 74 | 26.9091 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | homalt | 77.5054 | 66.3037 | 93.2615 | 54.3852 | 1035 | 526 | 1038 | 75 | 74 | 98.6667 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 73.6476 | 94.3083 | 60.4126 | 87.0492 | 1193 | 72 | 1230 | 806 | 74 | 9.1811 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.2684 | 99.7868 | 80.7560 | 85.2172 | 468 | 1 | 470 | 112 | 74 | 66.0714 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | het | 96.2185 | 98.9058 | 93.6733 | 82.5202 | 6870 | 76 | 6870 | 464 | 74 | 15.9483 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 58.8714 | 87.8468 | 44.2696 | 89.1685 | 1330 | 184 | 1294 | 1629 | 74 | 4.5427 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e0 | het | 91.3175 | 97.9152 | 85.5528 | 92.0328 | 1362 | 29 | 1362 | 230 | 74 | 32.1739 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.7863 | 96.9500 | 96.6233 | 75.9515 | 2384 | 75 | 2375 | 83 | 74 | 89.1566 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | het | 99.1441 | 98.9434 | 99.3457 | 70.2153 | 18073 | 193 | 18069 | 119 | 74 | 62.1849 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | het | 99.1665 | 98.9669 | 99.3669 | 71.7774 | 18681 | 195 | 18677 | 119 | 74 | 62.1849 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | het | 99.1705 | 98.9679 | 99.3738 | 71.8144 | 18890 | 197 | 18886 | 119 | 74 | 62.1849 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.5664 | 93.9498 | 89.3010 | 79.9025 | 823 | 53 | 626 | 75 | 74 | 98.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | het | 88.2507 | 86.4706 | 90.1055 | 86.0431 | 735 | 115 | 683 | 75 | 74 | 98.6667 | |
| qzeng-custom | SNP | * | HG002compoundhet | homalt | 98.8868 | 98.8963 | 98.8772 | 42.3069 | 10663 | 119 | 8190 | 93 | 74 | 79.5699 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | * | 96.1681 | 95.0125 | 97.3521 | 56.1640 | 4553 | 239 | 4559 | 124 | 74 | 59.6774 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.5569 | 70.6298 | 99.3305 | 60.9945 | 10889 | 4528 | 10979 | 74 | 74 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0995 | 86.0000 | 35.3448 | 60.4096 | 43 | 7 | 41 | 75 | 74 | 98.6667 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.9924 | 72.0930 | 69.9248 | 75.4613 | 186 | 72 | 186 | 80 | 74 | 92.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4308 | 99.2074 | 99.6552 | 61.9169 | 28036 | 224 | 28038 | 97 | 74 | 76.2887 | |