PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
81651-81700 / 86044 show all
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvmap_l100_m0_e0hetalt
72.0000
56.2500
100.0000
93.2331
97900
jmaeng-gatkSNPtvmap_l125_m0_e0hetalt
36.3636
22.2222
100.0000
98.3051
27200
jmaeng-gatkSNPtvmap_l125_m1_e0hetalt
77.5510
63.3333
100.0000
91.8103
19111900
jmaeng-gatkSNPtvmap_l125_m2_e0hetalt
77.5510
63.3333
100.0000
93.0909
19111900
jmaeng-gatkSNPtvmap_l125_m2_e1hetalt
77.5510
63.3333
100.0000
93.0909
19111900
jmaeng-gatkSNPtvmap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
99.0476
12100
jmaeng-gatkSNPtvmap_l150_m1_e0hetalt
70.9677
55.0000
100.0000
94.4444
1191100
jmaeng-gatkSNPtvmap_l150_m2_e0hetalt
70.9677
55.0000
100.0000
95.2381
1191100
jmaeng-gatkSNPtvmap_l150_m2_e1hetalt
70.9677
55.0000
100.0000
95.2381
1191100
jmaeng-gatkSNPtvmap_l250_m0_e0het
61.3583
45.8042
92.9078
98.5051
262310262200
0.0000
jmaeng-gatkSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvmap_l250_m1_e0hetalt
0.0000
100.0000
04000
jmaeng-gatkSNPtvmap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvmap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvsegduphet
97.3848
99.3758
95.4719
95.8451
52543352502490
0.0000
jmaeng-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
98.5685
70700
jmaeng-gatkSNPtvsegdupwithalt*
0.0000
100.0000
00000
jmaeng-gatkSNPtvsegdupwithalthet
0.0000
100.0000
00000
jmaeng-gatkSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
47.5410
3213200
jmaeng-gatkSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL**hetalt
0.0000
0.7648
0.0000
0.0000
19325044000
jpowers-varprowlINDEL*HG002complexvarhetalt
0.0000
2.7305
0.0000
0.0000
1013598000
jpowers-varprowlINDEL*HG002compoundhethetalt
0.0000
0.7625
0.0000
0.0000
19224988000
jpowers-varprowlINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9173
30300
jpowers-varprowlINDEL*func_cdshetalt
0.0000
0.0000
0.0000
05000
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.6015
0.0000
0.0000
233801000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8894
14100
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.9081
0.0000
0.0000
14015277000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
1.7964
0.0000
0.0000
3164000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
40.0000
25.0000
100.0000
99.8862
13100
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
2.5751
0.0000
0.0000
6227000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
3.7879
0.0000
0.0000
5127000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.5876
0.0000
0.0000
162707000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.6030
0.0000
0.0000
8313681000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.6033
0.0000
0.0000
6711038000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.6271
0.0000
0.0000
8813944000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.8401
0.0000
0.0000
8810387000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0799
0.0000
0.0000
11251000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000