PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
80901-80950 / 86044 show all
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.5610
30300
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.6471
20200
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
93.7133
90.3226
97.3684
99.9248
1121211130
0.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
91.4483
86.2069
97.3684
99.9056
75127420
0.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8805
1601600
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
97.6744
100.0000
95.4545
99.9618
2102110
0.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.6942
93.6000
100.0000
27.1605
117811800
jmaeng-gatkINDEL*map_l100_m0_e0hetalt
91.8033
84.8485
100.0000
91.6427
2852900
jmaeng-gatkINDEL*map_l100_m1_e0hetalt
93.1034
87.0968
100.0000
87.1915
1081610900
jmaeng-gatkINDEL*map_l100_m2_e0hetalt
92.7039
86.4000
100.0000
88.0952
1081711000
jmaeng-gatkINDEL*map_l100_m2_e1hetalt
92.2449
85.6061
100.0000
87.9328
1131911500
jmaeng-gatkINDEL*map_l125_m0_e0hetalt
95.2381
90.9091
100.0000
95.7082
1011000
jmaeng-gatkINDEL*map_l125_m1_e0hetalt
93.3333
87.5000
100.0000
93.2692
3553500
jmaeng-gatkINDEL*map_l125_m2_e0hetalt
93.6709
88.0952
100.0000
93.7710
3753700
jmaeng-gatkINDEL*map_l125_m2_e1hetalt
92.5000
86.0465
100.0000
93.8742
3763700
jmaeng-gatkINDEL*map_l150_m0_e0hetalt
94.1176
88.8889
100.0000
95.6757
81800
jmaeng-gatkINDEL*map_l150_m1_e0hetalt
92.3077
85.7143
100.0000
95.5665
1831800
jmaeng-gatkINDEL*map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
96.1207
1831800
jmaeng-gatkINDEL*map_l150_m2_e1hetalt
90.4762
82.6087
100.0000
95.9831
1941900
jmaeng-gatkINDEL*map_l250_m0_e0hetalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*map_l250_m1_e0hetalt
80.0000
66.6667
100.0000
98.2063
42400
jmaeng-gatkINDEL*map_l250_m2_e0hetalt
80.0000
66.6667
100.0000
98.5185
42400
jmaeng-gatkINDEL*map_l250_m2_e1hetalt
80.0000
66.6667
100.0000
98.5507
42400
jmaeng-gatkINDEL*map_sirenhetalt
93.3045
87.4494
100.0000
86.8039
2163121800
jmaeng-gatkINDEL*segduphetalt
95.1613
90.7692
100.0000
94.5726
1181212000
jmaeng-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9982
10100
jmaeng-gatkINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9975
10100
jmaeng-gatkINDEL*segdupwithalthetalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*segdupwithalthomalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*tech_badpromoters*
99.3377
98.6842
100.0000
53.9877
7517500
jmaeng-gatkINDEL*tech_badpromotershet
98.7013
97.4359
100.0000
51.8987
3813800
jmaeng-gatkINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
jmaeng-gatkINDEL*tech_badpromotershomalt
100.0000
100.0000
100.0000
56.5789
3303300
jmaeng-gatkINDELC16_PLUS**
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUS*het
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUS*hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUS*homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSHG002complexvar*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
0.0000
00000