PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
80751-80800 / 86044 show all
jli-customSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.5714
60600
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9749
99.9498
100.0000
34.6400
39852398500
jli-customSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
85.7143
100.0000
92.8741
3053000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7984
99.8789
99.7181
29.8389
24753247670
0.0000
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
93.2203
80800
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.0000
60600
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
95.3488
20200
jli-customSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
73.3333
80800
jli-customSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
67.5676
2402400
jli-customSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
73.6264
2402400
jli-customSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
73.6264
2402400
jli-customSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
86.3636
30300
jli-customSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
73.6842
1501500
jli-customSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
77.9412
1501500
jli-customSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
77.9412
1501500
jli-customSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
jli-customSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.6667
40400
jli-customSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
85.2941
50500
jli-customSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
85.2941
50500
jli-customSNPtisegduphetalt
100.0000
100.0000
100.0000
98.7500
20200
jli-customSNPtisegdupwithalt*
0.0000
100.0000
00000
jli-customSNPtisegdupwithalthet
0.0000
100.0000
00000
jli-customSNPtisegdupwithalthetalt
0.0000
100.0000
00000
jli-customSNPtisegdupwithalthomalt
0.0000
100.0000
00000
jli-customSNPtitech_badpromotershet
98.8506
97.7273
100.0000
46.9136
4314300
jli-customSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
jli-customSNPtvHG002compoundhethetalt
99.8839
99.7680
100.0000
23.0769
860286000
jli-customSNPtvdecoy*
0.0000
100.0000
00000
jli-customSNPtvdecoyhet
0.0000
100.0000
00000
jli-customSNPtvdecoyhetalt
0.0000
100.0000
00000
jli-customSNPtvdecoyhomalt
0.0000
100.0000
00000
jli-customSNPtvfunc_cds*
99.8629
99.9771
99.7489
28.1332
437014370110
0.0000
jli-customSNPtvfunc_cdshet
99.7746
99.9624
99.5876
29.8712
265612656110
0.0000
jli-customSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
jli-customSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.8014
17040170400