PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
80651-80700 / 86044 show all
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
90.9556
106410600
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3658
98.8433
99.8937
85.6380
9401194010
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5289
99.1784
99.8818
84.7237
845784510
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.8776
30300
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8261
99.6816
99.9710
63.0365
344411344410
0.0000
jli-customSNP*lowcmp_SimpleRepeat_diTR_51to200*
97.5610
95.2381
100.0000
97.2918
4024000
jli-customSNP*lowcmp_SimpleRepeat_diTR_51to200het
96.1538
92.5926
100.0000
97.7252
2522500
jli-customSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.0106
1501500
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
jli-customSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.5065
87.8049
100.0000
92.9961
3653600
jli-customSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.2381
90900
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.7368
70700
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.4286
20200
jli-customSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
79.0698
90900
jli-customSNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
74.1379
3003000
jli-customSNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.1765
30300
jli-customSNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
78.4946
2002000
jli-customSNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
jli-customSNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
40400
jli-customSNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNP*segduphetalt
100.0000
100.0000
100.0000
97.1429
70700
jli-customSNP*segdupwithalt*
0.0000
100.0000
00000
jli-customSNP*segdupwithalthet
0.0000
100.0000
00000
jli-customSNP*segdupwithalthetalt
0.0000
100.0000
00000