PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
80601-80650 / 86044 show all
jmaeng-gatkSNPtimap_l250_m2_e0homalt
64.7332
47.8559
100.0000
92.8296
83791283700
jli-customINDELI6_15map_l250_m2_e0hetalt
0.0000
100.0000
00000
jli-customINDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
97.2222
21200
jli-customINDELI6_15map_l250_m2_e1hetalt
0.0000
100.0000
00000
jli-customINDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.4359
21200
jli-customINDELI6_15map_sirenhetalt
97.1429
94.4444
100.0000
77.5578
6846800
jli-customINDELI6_15segdup*
98.5507
97.1429
100.0000
91.7715
170517000
jli-customINDELI6_15segduphet
98.7805
97.5904
100.0000
92.5346
8128100
jli-customINDELI6_15segduphetalt
97.7273
95.5556
100.0000
90.0693
4324300
jli-customINDELI6_15segduphomalt
98.9247
97.8723
100.0000
91.6058
4614600
jli-customINDELI6_15segdupwithalt*
0.0000
100.0000
00000
jli-customINDELI6_15segdupwithalthet
0.0000
100.0000
00000
jli-customINDELI6_15segdupwithalthetalt
0.0000
100.0000
00000
jli-customINDELI6_15segdupwithalthomalt
0.0000
100.0000
00000
jli-customINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
53.5714
1301300
jli-customINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
50.0000
70700
jli-customINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
jli-customINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
jli-customSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
jli-customSNP*HG002compoundhethetalt
99.8839
99.7680
100.0000
23.0769
860286000
jli-customSNP*decoy*
0.0000
100.0000
00000
jli-customSNP*decoyhet
0.0000
100.0000
00000
jli-customSNP*decoyhetalt
0.0000
100.0000
00000
jli-customSNP*decoyhomalt
0.0000
100.0000
00000
jli-customSNP*func_cds*
99.9036
99.9559
99.8514
23.3699
18142818142270
0.0000
jli-customSNP*func_cdshet
99.8568
99.9552
99.7586
24.6835
11156511156270
0.0000
jli-customSNP*func_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
jli-customSNP*func_cdshomalt
99.9785
99.9570
100.0000
21.0413
69763697600
jli-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.6087
1211200
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.3316
99.5905
99.0741
54.4458
2675112675250
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6527
99.7736
99.5322
54.5761
6170146170290
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4669
99.6693
99.2653
55.9536
3918133918290
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.9120
22511225100
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6651
99.7679
99.5625
58.6903
386993869170
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4796
99.6391
99.3205
59.4883
248592485170
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
57.1429
13830138300
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000