PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
80551-80600 / 86044 show all
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4337
98.8739
100.0000
84.6019
439543900
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.7382
99.4778
100.0000
83.4564
381238100
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
20200
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8342
99.6690
100.0000
72.9599
24098240900
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7711
1201200
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9111
99.8223
100.0000
64.1566
16853168500
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.9564
1511500
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.3364
91900
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.8750
60600
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
85.7143
10100
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200*
96.4103
93.0693
100.0000
93.4677
9479400
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200het
96.0630
92.4242
100.0000
93.9544
6156100
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
97.0588
94.2857
100.0000
92.3256
3323300
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7576
99.6772
99.8383
36.6060
24708246940
0.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.5946
80800
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
93.0233
60600
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7742
20200
jmaeng-gatkSNPtimap_l100_m0_e0hetalt
72.7273
57.1429
100.0000
90.5882
86800
jmaeng-gatkSNPtimap_l125_m0_e0hetalt
40.0000
25.0000
100.0000
97.2973
26200
jmaeng-gatkSNPtimap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
88.4058
1681600
jmaeng-gatkSNPtimap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
90.4192
1681600
jmaeng-gatkSNPtimap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
90.4192
1681600
jmaeng-gatkSNPtimap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.4615
12100
jmaeng-gatkSNPtimap_l150_m1_e0hetalt
75.0000
60.0000
100.0000
92.1739
96900
jmaeng-gatkSNPtimap_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.2331
96900
jmaeng-gatkSNPtimap_l150_m2_e1hetalt
75.0000
60.0000
100.0000
93.2331
96900
jmaeng-gatkSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtimap_l250_m0_e0homalt
62.4606
45.4128
100.0000
95.4774
19823819800
jmaeng-gatkSNPtimap_l250_m1_e0hetalt
0.0000
100.0000
04000
jmaeng-gatkSNPtimap_l250_m1_e0homalt
63.5823
46.6086
100.0000
92.3540
74985874900
jmaeng-gatkSNPtimap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.8636
14100