PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1603 1604 1605 1606 1607 1608 1609 1610 1611 ... 1720 1721 » 80301-80350 / 86044 show all
jmaeng-gatk	INDEL	I1_5	map_l125_m2_e1	hetalt	100.0000	100.0000	100.0000	93.5593	19	0	19	0	0
jmaeng-gatk	INDEL	I1_5	map_l150_m0_e0	het	94.4228	95.2830	93.5780	96.1457	101	5	102	7	0	0.0000
jmaeng-gatk	INDEL	I1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	96.0000	3	0	3	0	0
jmaeng-gatk	INDEL	I1_5	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	95.3125	9	0	9	0	0
jmaeng-gatk	INDEL	I1_5	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	95.9821	9	0	9	0	0
jmaeng-gatk	INDEL	I1_5	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	95.6332	10	0	10	0	0
jmaeng-gatk	INDEL	I1_5	map_l250_m0_e0	het	85.7143	80.0000	92.3077	99.2499	12	3	12	1	0	0.0000
jmaeng-gatk	INDEL	I1_5	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	map_l250_m1_e0	het	90.9091	91.6667	90.1639	98.1015	55	5	55	6	0	0.0000
jmaeng-gatk	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.0392	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	map_l250_m2_e0	het	91.7293	92.4242	91.0448	98.1911	61	5	61	6	0	0.0000
jmaeng-gatk	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.4127	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	map_l250_m2_e1	het	91.7293	92.4242	91.0448	98.2502	61	5	61	6	0	0.0000
jmaeng-gatk	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.4375	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	map_siren	hetalt	95.3271	91.0714	100.0000	86.8047	102	10	102	0	0
jmaeng-gatk	INDEL	I1_5	segdup	het	93.2743	99.0706	88.1188	96.5876	533	5	534	72	0	0.0000
jmaeng-gatk	INDEL	I1_5	segdup	hetalt	95.6522	91.6667	100.0000	95.9750	44	4	45	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	53.1915	22	0	22	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	42.8571	8	0	8	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
jmaeng-gatk	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	58.0645	13	0	13	0	0
jmaeng-gatk	INDEL	I6_15	HG002complexvar	hetalt	95.0665	90.5969	100.0000	53.0086	1108	115	1148	0	0
jmaeng-gatk	INDEL	I6_15	HG002compoundhet	hetalt	95.7568	91.8590	100.0000	28.4755	7842	695	7882	0	0
jmaeng-gatk	INDEL	I6_15	decoy	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	func_cds	*	97.6744	97.6744	97.6744	41.8919	42	1	42	1	0	0.0000
jmaeng-gatk	INDEL	I6_15	func_cds	het	97.9592	100.0000	96.0000	44.4444	24	0	24	1	0	0.0000
jmaeng-gatk	INDEL	I6_15	func_cds	hetalt	85.7143	75.0000	100.0000	0.0000	3	1	3	0	0
jmaeng-gatk	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	42.3077	15	0	15	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.8210	86.6038	100.0000	44.7917	459	71	477	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.8553	95.0617	98.7179	79.5812	77	4	77	1	0	0.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	89.0909	80.3279	100.0000	51.0000	49	12	49	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.1453	98.3051	100.0000	74.5985	174	3	174	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	96.3415	92.9412	100.0000	54.5455	79	6	80	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.9562	97.9339	100.0000	69.3299	237	5	238	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5885	99.1803	100.0000	71.9258	121	1	121	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge