PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
80251-80300 / 86044 show all
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8605
10100
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.2963
10100
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6129
84.5238
100.0000
54.1935
71137100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8559
10100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
10100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7409
99.6119
99.8703
78.8245
770377010
0.0000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.8140
91.9643
100.0000
71.8579
103910300
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9088
99.8179
100.0000
81.3161
548154800
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
78.6517
5735700
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
89.9913
81.8038
100.0000
35.7482
51711554100
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
89.7959
81.4815
100.0000
97.5207
225300
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5638
99.6361
99.4916
74.0824
13695137070
0.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9933
10100
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9837
10100
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
96.9945
94.1645
100.0000
38.4968
106566107200
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
94.6218
92.1569
97.2222
94.3038
4743510
0.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
94.9153
90.3226
100.0000
36.0000
1962120800
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.5450
95.2077
100.0000
30.5361
2981529800
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200*
96.0000
96.0000
96.0000
62.6866
2412410
0.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
90.9091
20210
0.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
97.7778
95.6522
100.0000
12.0000
2212200
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
jmaeng-gatkINDELI1_5map_l100_m0_e0het
95.9708
98.1595
93.8776
91.6586
3206322210
0.0000
jmaeng-gatkINDELI1_5map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
93.5252
90900
jmaeng-gatkINDELI1_5map_l100_m1_e0hetalt
96.4706
93.1818
100.0000
88.7671
4134100
jmaeng-gatkINDELI1_5map_l100_m2_e0hetalt
96.4706
93.1818
100.0000
89.6465
4134100
jmaeng-gatkINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6296
4234200
jmaeng-gatkINDELI1_5map_l125_m0_e0het
95.4250
97.3958
93.5323
94.0708
1875188130
0.0000
jmaeng-gatkINDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.0784
40400
jmaeng-gatkINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
93.3071
1701700
jmaeng-gatkINDELI1_5map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.4483
1901900