PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
79701-79750 / 86044 show all | |||||||||||||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1706 | 98.8297 | 99.5138 | 43.4464 | 2449 | 29 | 2456 | 12 | 0 | 0.0000 | |
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.0492 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 6 | 0 | 6 | 0 | 0 | ||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.6522 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 57 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | ti | tech_badpromoters | het | 94.3820 | 95.4545 | 93.3333 | 56.7308 | 42 | 2 | 42 | 3 | 0 | 0.0000 | |
jpowers-varprowl | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | tv | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | tv | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 310 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 862 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
jpowers-varprowl | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 |