PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78901-78950 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 87.6325 | 35 | 1 | 35 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6190 | 96.0938 | 99.1935 | 89.4288 | 123 | 5 | 123 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1429 | 95.7746 | 98.5507 | 90.6631 | 68 | 3 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.8056 | 19 | 1 | 19 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.5862 | 36 | 1 | 36 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 93.3194 | 32 | 0 | 32 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.6102 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9655 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 99.3103 | 98.6301 | 100.0000 | 91.1001 | 72 | 1 | 72 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.4272 | 39 | 0 | 39 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.1111 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 87.7451 | 25 | 1 | 25 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 91.1281 | 81 | 1 | 81 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.0553 | 46 | 0 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.2609 | 27 | 1 | 27 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 98.8095 | 97.6471 | 100.0000 | 91.1230 | 83 | 2 | 83 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 92.1008 | 47 | 0 | 47 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 88.0342 | 28 | 1 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.9732 | 18 | 0 | 18 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.1938 | 11 | 0 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2830 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.7854 | 22 | 0 | 22 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8209 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.1220 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.9032 | 22 | 0 | 22 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.9420 | 14 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.2756 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_siren | hetalt | 96.3731 | 93.9394 | 98.9362 | 75.0000 | 93 | 6 | 93 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 81.5562 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | segdup | het | 96.6292 | 93.4783 | 100.0000 | 94.4373 | 86 | 6 | 86 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | segdup | hetalt | 96.8421 | 93.8776 | 100.0000 | 90.2335 | 46 | 3 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 51.5152 | 16 | 1 | 16 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 52.6316 | 9 | 1 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | HG002complexvar | het | 94.3784 | 89.7744 | 99.4801 | 60.9343 | 597 | 68 | 574 | 3 | 0 | 0.0000 | |