PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78851-78900 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 47.1698 | 28 | 1 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.5946 | 89.7436 | 100.0000 | 53.9474 | 35 | 4 | 35 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 76.5027 | 43 | 0 | 43 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0803 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.5904 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8665 | 100.0000 | 99.7333 | 58.1006 | 374 | 0 | 374 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 55.8974 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6764 | 99.3548 | 100.0000 | 82.9268 | 154 | 1 | 154 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0742 | 74 | 0 | 74 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.6059 | 85.9649 | 98.0392 | 99.3838 | 49 | 8 | 50 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 88.3117 | 80.9524 | 97.1429 | 99.2233 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2437 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7287 | 6 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3558 | 98.7198 | 100.0000 | 43.9418 | 694 | 9 | 694 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.3616 | 577 | 7 | 578 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 21.1864 | 93 | 4 | 93 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 34.3750 | 21 | 0 | 21 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 81.1881 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.6700 | 23 | 1 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 71.9828 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 84.5000 | 62 | 2 | 62 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 73.6842 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 85.1064 | 63 | 2 | 63 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7746 | 93.1507 | 98.5507 | 73.5632 | 68 | 5 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 85.0575 | 65 | 2 | 65 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 92.1769 | 46 | 1 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 92.7083 | 28 | 1 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 88.8781 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 90.3226 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4262 | 19 | 0 | 19 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 87.3563 | 33 | 1 | 33 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9920 | 96.8254 | 99.1870 | 89.2576 | 122 | 4 | 122 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1429 | 95.7746 | 98.5507 | 90.4300 | 68 | 3 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.5248 | 19 | 0 | 19 | 0 | 0 | ||