PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77551-77600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | * | 94.0775 | 90.5660 | 97.8723 | 85.5385 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | het | 89.2193 | 83.3333 | 96.0000 | 82.0144 | 25 | 5 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.0256 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.1111 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | * | 94.0775 | 90.5660 | 97.8723 | 87.6640 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | het | 89.2193 | 83.3333 | 96.0000 | 84.4720 | 25 | 5 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.3721 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | * | 94.0775 | 90.5660 | 97.8723 | 87.9487 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | het | 89.2193 | 83.3333 | 96.0000 | 84.6626 | 25 | 5 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4731 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8060 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.0594 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 94.2857 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.1892 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 90.9836 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 88.1188 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1392 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 92.2261 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 89.3805 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8904 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7835 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | * | 90.1961 | 85.1852 | 95.8333 | 91.8089 | 23 | 4 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.7931 | 12 | 4 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.1569 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 96.1240 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.8042 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 94.4444 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.9732 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 94.5455 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 91.0788 | 44 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 89.8649 | 45 | 2 | 45 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||