PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77451-77500 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5398 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1038 | 91.2621 | 99.2832 | 83.3631 | 282 | 27 | 277 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9880 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | het | 95.2326 | 91.4826 | 99.3031 | 83.5057 | 290 | 27 | 285 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7456 | 10 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m0_e0 | * | 93.7037 | 91.6667 | 95.8333 | 96.0461 | 22 | 2 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m0_e0 | het | 89.6552 | 86.6667 | 92.8571 | 93.5185 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7532 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | het | 91.0871 | 85.0000 | 98.1132 | 91.4239 | 51 | 9 | 52 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8235 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | het | 91.9483 | 86.3636 | 98.3051 | 92.7160 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0521 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | het | 97.6073 | 96.1333 | 99.1272 | 75.0467 | 1616 | 65 | 1590 | 14 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | het | 98.3082 | 97.7695 | 98.8528 | 93.0710 | 526 | 12 | 517 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | hetalt | 98.9474 | 97.9167 | 100.0000 | 96.6403 | 47 | 1 | 51 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 53.1915 | 22 | 0 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 31.1475 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 32.3529 | 24 | 0 | 23 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.8571 | 3 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 67.3828 | 164 | 14 | 164 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3396 | 92.5926 | 96.1538 | 72.7273 | 75 | 6 | 75 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9825 | 86.8852 | 100.0000 | 58.9147 | 53 | 8 | 53 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 62.8866 | 36 | 0 | 36 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0096 | 96.8927 | 99.1525 | 64.3505 | 343 | 11 | 351 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.7368 | 97.1751 | 98.3051 | 65.9615 | 172 | 5 | 174 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 63.4361 | 79 | 6 | 83 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 61.7886 | 92 | 0 | 94 | 0 | 0 | ||