PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77151-77200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 95.4545 | 6 | 2 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 95.4023 | 5 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.7838 | 6 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 75.9036 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 80.0000 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 80.1980 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 81.2500 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.4156 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0698 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 45.8599 | 85 | 0 | 85 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 45.6790 | 44 | 0 | 44 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | HG002compoundhet | hetalt | 99.3579 | 98.7239 | 100.0000 | 23.5400 | 851 | 11 | 851 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | func_cds | * | 99.9314 | 99.9771 | 99.8857 | 28.0901 | 4370 | 1 | 4370 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | func_cds | het | 99.8872 | 99.9624 | 99.8121 | 28.8312 | 2656 | 1 | 2656 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.5517 | 1704 | 0 | 1704 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5730 | 15 | 0 | 15 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||