PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75601-75650 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2366 | 98.9899 | 99.4845 | 82.8773 | 196 | 2 | 193 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6462 | 96.1464 | 99.1935 | 86.0635 | 499 | 20 | 492 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | het | 96.5090 | 94.1748 | 98.9619 | 84.5620 | 291 | 18 | 286 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1591 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2481 | 99.0050 | 99.4924 | 85.2434 | 199 | 2 | 196 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7011 | 96.2335 | 99.2141 | 86.1081 | 511 | 20 | 505 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | het | 96.5995 | 94.3218 | 98.9899 | 84.6986 | 299 | 18 | 294 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9274 | 10 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2605 | 99.0196 | 99.5025 | 85.2747 | 202 | 2 | 200 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | * | 93.7037 | 91.6667 | 95.8333 | 95.3307 | 22 | 2 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | het | 89.6552 | 86.6667 | 92.8571 | 94.4444 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1860 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | het | 92.2036 | 88.3333 | 96.4286 | 92.1897 | 53 | 7 | 54 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9011 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.8506 | 97.7273 | 100.0000 | 91.7625 | 43 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.4627 | 92.9204 | 98.1481 | 93.7895 | 105 | 8 | 106 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | het | 92.9378 | 89.3939 | 96.7742 | 93.0023 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.8764 | 97.7778 | 100.0000 | 93.0599 | 44 | 1 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5035 | 92.9825 | 98.1651 | 93.9646 | 106 | 8 | 107 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | het | 92.9378 | 89.3939 | 96.7742 | 93.3405 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0991 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9011 | 97.8261 | 100.0000 | 93.1087 | 45 | 1 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 92.1300 | 108 | 4 | 109 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | * | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 43.7500 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 33.3333 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 34.2857 | 24 | 0 | 23 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.8571 | 3 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.8276 | 90.1639 | 100.0000 | 55.6452 | 55 | 6 | 55 | 0 | 0 | ||